View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_7 (Length: 525)
Name: NF20250_low_7
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 281 - 396
Target Start/End: Complemental strand, 50831125 - 50831010
Alignment:
| Q |
281 |
tgggcttttagaaactgcatgacattaccttgaattacagtgttcttaatatttcagtagtaccgttctaagtgtcgaaggctatgtagccaagtcaaag |
380 |
Q |
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| T |
50831125 |
tgggcttttagaaactgcatgacattaccttcaattacagtgtccttaatatttcggaagtacggttcaaagtgtcgatggctatgtcgccaagtcaaag |
50831026 |
T |
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| Q |
381 |
acggaggggagtgctt |
396 |
Q |
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| T |
50831025 |
accaaggggagtgctt |
50831010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 50831906 - 50831828
Alignment:
| Q |
18 |
cttgttgaccggtacaactcagccaatatttaaaatgaccatataagacatttttgtctggttatcccgttatttacaa |
96 |
Q |
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| T |
50831906 |
cttgttgactggtacaactcagccaagatttaaaataactatacaagacatttttgtctggttgtcccattatgtacaa |
50831828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 4515838 - 4515883
Alignment:
| Q |
18 |
cttgttgaccggtacaactcagccaatatttaaaatgaccatataa |
63 |
Q |
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| T |
4515838 |
cttgttgactgggacaactcagccaatatttaaaatgaccatataa |
4515883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 50831228 - 50831176
Alignment:
| Q |
185 |
gaagctcagtgggctttatgaatatcaaactactgccgcatcagttgatccaa |
237 |
Q |
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| T |
50831228 |
gaagctcggtaggctttctgaatctcaaactactgccgcatcagttgatccaa |
50831176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 50831554 - 50831502
Alignment:
| Q |
135 |
taccattgactctaacgccagttctactcaggtctcagagagttgtgtcagaa |
187 |
Q |
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| T |
50831554 |
taccattaactccaacaccagttctattcaggcctcagagagttgtgtcagaa |
50831502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 1034174 - 1034206
Alignment:
| Q |
18 |
cttgttgaccggtacaactcagccaatatttaa |
50 |
Q |
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| T |
1034174 |
cttgttgaccggtacaactcagccaatatttaa |
1034206 |
T |
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