View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20250_low_8 (Length: 499)

Name: NF20250_low_8
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20250_low_8
NF20250_low_8
[»] chr8 (19 HSPs)
chr8 (213-488)||(26274494-26274769)
chr8 (16-216)||(26268424-26268627)
chr8 (16-217)||(33032436-33032642)
chr8 (16-216)||(17799618-17799823)
chr8 (16-102)||(23179755-23179842)
chr8 (16-102)||(21033771-21033858)
chr8 (16-102)||(590695-590782)
chr8 (16-102)||(9021301-9021388)
chr8 (16-102)||(29554979-29555066)
chr8 (16-94)||(28895411-28895490)
chr8 (16-108)||(2267217-2267311)
chr8 (16-108)||(30423106-30423200)
chr8 (15-102)||(3276245-3276333)
chr8 (16-84)||(16752716-16752785)
chr8 (16-84)||(16757461-16757530)
chr8 (16-84)||(25684562-25684631)
chr8 (16-84)||(28327827-28327896)
chr8 (16-84)||(4812681-4812750)
chr8 (16-102)||(15944774-15944861)
[»] chr1 (12 HSPs)
chr1 (16-214)||(4144877-4145080)
chr1 (16-102)||(21353540-21353627)
chr1 (16-108)||(25133966-25134059)
chr1 (16-102)||(9526367-9526454)
chr1 (16-108)||(3091300-3091394)
chr1 (16-94)||(2393476-2393555)
chr1 (16-94)||(9521624-9521703)
chr1 (20-108)||(14996935-14997024)
chr1 (16-102)||(46783044-46783131)
chr1 (16-84)||(2232516-2232585)
chr1 (16-67)||(2401415-2401467)
chr1 (131-185)||(2393578-2393632)
[»] chr6 (23 HSPs)
chr6 (16-125)||(19702056-19702167)
chr6 (18-102)||(22352048-22352133)
chr6 (16-102)||(13467657-13467744)
chr6 (16-102)||(3577708-3577795)
chr6 (16-102)||(17695045-17695132)
chr6 (16-102)||(22342995-22343082)
chr6 (16-94)||(26643085-26643164)
chr6 (16-94)||(26749051-26749130)
chr6 (16-102)||(33215728-33215815)
chr6 (16-102)||(25466093-25466180)
chr6 (16-84)||(17035974-17036043)
chr6 (16-108)||(5166010-5166102)
chr6 (16-84)||(13878646-13878715)
chr6 (16-84)||(13883394-13883463)
chr6 (16-84)||(16785838-16785907)
chr6 (16-84)||(26887418-26887487)
chr6 (16-84)||(31248908-31248977)
chr6 (16-84)||(35201520-35201589)
chr6 (16-94)||(25941554-25941632)
chr6 (131-169)||(5166111-5166149)
chr6 (89-125)||(12166389-12166425)
chr6 (16-102)||(24542868-24542954)
chr6 (16-67)||(12166340-12166393)
[»] chr4 (24 HSPs)
chr4 (16-216)||(13072175-13072361)
chr4 (16-125)||(36771273-36771384)
chr4 (16-125)||(47566370-47566481)
chr4 (16-102)||(18586867-18586954)
chr4 (16-125)||(36769356-36769467)
chr4 (16-108)||(25699644-25699737)
chr4 (15-125)||(4558188-4558300)
chr4 (16-102)||(8529168-8529255)
chr4 (16-102)||(15831042-15831129)
chr4 (16-108)||(16638721-16638815)
chr4 (16-108)||(4569989-4570082)
chr4 (16-94)||(15312225-15312304)
chr4 (16-102)||(31300325-31300412)
chr4 (16-108)||(16489244-16489337)
chr4 (15-102)||(15316859-15316947)
chr4 (16-102)||(4556253-4556340)
chr4 (16-102)||(4884775-4884862)
chr4 (16-102)||(16689134-16689221)
chr4 (16-84)||(55822184-55822253)
chr4 (16-75)||(7050451-7050511)
chr4 (131-186)||(4558109-4558164)
chr4 (16-92)||(25614114-25614191)
chr4 (16-84)||(11853468-11853537)
chr4 (131-195)||(18537776-18537839)
[»] chr7 (24 HSPs)
chr7 (16-119)||(21369525-21369630)
chr7 (16-108)||(25410025-25410118)
chr7 (16-108)||(25351248-25351341)
chr7 (16-108)||(25356942-25357035)
chr7 (16-102)||(34547057-34547144)
chr7 (16-108)||(44016855-44016949)
chr7 (16-102)||(7464712-7464799)
chr7 (16-102)||(42006564-42006651)
chr7 (16-94)||(8378698-8378777)
chr7 (17-108)||(44010945-44011038)
chr7 (16-108)||(44144060-44144153)
chr7 (16-102)||(30246871-30246958)
chr7 (16-102)||(44512719-44512806)
chr7 (22-94)||(2120807-2120880)
chr7 (16-87)||(1099628-1099700)
chr7 (16-84)||(7069699-7069768)
chr7 (16-84)||(7074706-7074775)
chr7 (16-84)||(15541189-15541258)
chr7 (16-84)||(25405312-25405381)
chr7 (20-94)||(6067399-6067474)
chr7 (16-83)||(3320244-3320312)
chr7 (16-83)||(3324992-3325060)
chr7 (131-186)||(44011047-44011102)
chr7 (131-186)||(44016958-44017013)
[»] chr2 (19 HSPs)
chr2 (16-108)||(17943432-17943525)
chr2 (16-108)||(38190892-38190985)
chr2 (16-102)||(27517833-27517920)
chr2 (16-102)||(35894455-35894542)
chr2 (16-108)||(12781415-12781508)
chr2 (18-102)||(37170948-37171033)
chr2 (16-102)||(17932535-17932622)
chr2 (16-102)||(20050216-20050303)
chr2 (16-102)||(22712710-22712797)
chr2 (16-102)||(30478895-30478982)
chr2 (16-102)||(33674599-33674686)
chr2 (16-102)||(20054959-20055046)
chr2 (16-94)||(22717419-22717498)
chr2 (16-84)||(2736124-2736193)
chr2 (16-84)||(2740860-2740929)
chr2 (16-84)||(17462355-17462424)
chr2 (16-84)||(39686902-39686971)
chr2 (16-84)||(45567328-45567397)
chr2 (16-84)||(39679964-39680033)
[»] chr5 (19 HSPs)
chr5 (16-216)||(11962627-11962814)
chr5 (16-102)||(42238204-42238291)
chr5 (86-219)||(20718356-20718491)
chr5 (16-102)||(1240329-1240416)
chr5 (16-102)||(22672735-22672822)
chr5 (16-101)||(31782651-31782738)
chr5 (16-94)||(40222672-40222751)
chr5 (16-94)||(25445401-25445480)
chr5 (20-108)||(10627257-10627347)
chr5 (16-108)||(16093484-16093578)
chr5 (16-94)||(2298195-2298274)
chr5 (16-94)||(25452404-25452483)
chr5 (16-93)||(35385646-35385724)
chr5 (16-108)||(26406667-26406760)
chr5 (16-102)||(28786307-28786392)
chr5 (16-101)||(17841443-17841530)
chr5 (16-84)||(1170730-1170799)
chr5 (131-199)||(34034589-34034655)
chr5 (16-108)||(25838002-25838095)
[»] chr3 (28 HSPs)
chr3 (16-102)||(10612972-10613059)
chr3 (16-102)||(10896906-10896993)
chr3 (16-96)||(11079424-11079505)
chr3 (16-102)||(5858447-5858534)
chr3 (16-102)||(29914147-29914234)
chr3 (16-102)||(47878365-47878452)
chr3 (16-96)||(27762180-27762261)
chr3 (16-112)||(38002760-38002857)
chr3 (16-108)||(47883076-47883169)
chr3 (16-125)||(3329770-3329881)
chr3 (16-102)||(4535515-4535602)
chr3 (20-102)||(54193126-54193209)
chr3 (16-102)||(22626178-22626265)
chr3 (16-108)||(10595228-10595321)
chr3 (16-108)||(10949454-10949546)
chr3 (20-102)||(54188409-54188492)
chr3 (16-94)||(16462112-16462191)
chr3 (20-108)||(13893356-13893445)
chr3 (16-102)||(20031512-20031595)
chr3 (16-84)||(6303229-6303298)
chr3 (16-84)||(10094268-10094337)
chr3 (16-84)||(10100285-10100354)
chr3 (16-84)||(10201148-10201217)
chr3 (16-84)||(10208194-10208263)
chr3 (16-84)||(27544192-27544261)
chr3 (131-198)||(7417666-7417732)
chr3 (47-102)||(48390446-48390501)
chr3 (47-108)||(7417964-7418025)
[»] scaffold0256 (1 HSPs)
scaffold0256 (16-102)||(16226-16313)
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-102)||(188436-188523)
[»] scaffold0209 (1 HSPs)
scaffold0209 (19-102)||(17183-17267)
[»] scaffold0131 (1 HSPs)
scaffold0131 (16-84)||(31060-31129)
[»] scaffold0006 (1 HSPs)
scaffold0006 (16-84)||(224738-224807)
[»] scaffold1764 (1 HSPs)
scaffold1764 (48-94)||(1345-1391)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 213 - 488
Target Start/End: Original strand, 26274494 - 26274769
Alignment:
Q  213 ttctgtaaattaaggactgaaagaaggggaaaataccctgagataaagaatgtcaccacccaaagagagttcattacgcatccctctattttcatagaaa 312  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26274494 ttctataaattaaggactgaaagaaggggaaaataccctgagatagagaatgtcaccacccaaagagagttcattacacatccctctattttcatagaaa 26274593  T
Q  313 caagctcctttccactgaattgacgcattggaaggagtgaccaaaccaacgaaataaggtaaaaaatcaacggcacagtgaaagttatttagagctggcc 412  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26274594 caagctcctttccactgaattgaagcattggaaggagtgaccaaaccaacgaaataaggtaacaaatcaacggcacagtgaaagttatttagagctggcc 26274693  T
Q  413 acgatatcccgtgtggaagaatgggaagcacattatttactctaaacagtaccatcaaactcgacatgcaccctat 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26274694 acgatatcccgtgtggaagaatgggaagcacattatttactctaaacagtaccatcaaactcgacatgcaccctat 26274769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 26268424 - 26268627
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgttt 114  Q
    ||||||||||||| |||| ||||||||||||| ||||||| || ||||||||| ||||||||||||| |||||||||||| | ||||||||||| | |||    
T  26268424 aatcaaaacaatctcaactctagtgttgttgccaagagaaattctctataaaccctagtttgtatgtaggcttctaaaccttgttttttacacattattt 26268523  T
Q  115 tgtttctacaccatattc--tgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaatcatgcccaaaaatacaatctgtttt 212  Q
    ||||||||||||||||||  ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| || ||||||    
T  26268524 tgtttctacaccatattcattgatacaaggtttatatttacagtggaaaacatccctcataaaaaggaacaaaatcaggcccaaaaatacgatatgtttt 26268623  T
Q  213 ttct 216  Q
    ||||    
T  26268624 ttct 26268627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 33032642 - 33032436
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgttt 114  Q
    ||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||| | |||| |||||| |||||    
T  33032642 aatcaaaacaatctcaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccatgttttctacacaatgttt 33032543  T
Q  115 tgtttctacac----catattctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaatcatgcccaaaaatacaatctgtt 210  Q
    |||||||||||     ||  ||| ||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||  ||||||||||| |||||||    
T  33032542 tgtttctacacacgtaatcatctaatacaaggtttatatttatagtggaaagcatccctcataaaaaggaacaaaatcagacccaaaaatacgatctgtt 33032443  T
Q  211 ttttctg 217  Q
    |||||||    
T  33032442 ttttctg 33032436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 17799618 - 17799823
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgca-agagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgttt 114  Q
    ||||||||||||||||||||||||||||||||  ||| || || ||||||||  |||||||||||||||||||||||||||| |||| |||| |||||||    
T  17799618 aatcaaaacaatcccaaccctagtgttgttgcctagacaaattctctataaatcctagtttgtatgttggcttctaaaccctgttttctacatagtgttt 17799717  T
Q  115 tgtttctacac-cata---ttctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaatcatgcccaaaaatacaatctgtt 210  Q
    ||||||||||| ||||    ||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||     
T  17799718 tgtttctacacacataatcatctgatataaggtttatatttatagtggaaagcatccctcataaaaaggaacaaaatcaggcccaaaaatacgatctgta 17799817  T
Q  211 ttttct 216  Q
    ||||||    
T  17799818 ttttct 17799823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 23179755 - 23179842
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||||    
T  23179755 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttt 23179842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 21033858 - 21033771
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||| |||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||||    
T  21033858 aatcaaaacaatcccaagcctagtgttgttgccaagagaaattatctataaaccctagtttgtatgttggcttctaaaccctgttttt 21033771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 590782 - 590695
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||| ||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  590782 aatcaaaacaatcccaacccaagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 590695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 9021301 - 9021388
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||| ||||||||||||||||||| ||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  9021301 aatcaaaacaatccgaaccctagtgttgttgcaaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 9021388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 29554979 - 29555066
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||||||||||| |||||||| || |||| |||| |||||||||||| ||| ||||||||||| |||||    
T  29554979 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctaaaaaccctagtttgtatgatggtttctaaaccctgttttt 29555066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 28895490 - 28895411
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||| ||||||||| |||||||| ||||||| || ||||||||| |||||||||||||||| |||||||||    
T  28895490 aatcaaaacaatctcaaccctagagttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaacc 28895411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 2267217 - 2267311
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||| ||||| ||||||| ||||| ||||||| || ||||||||| |||||||||||||||||||||||||| | |||| ||||||    
T  2267217 aatcaaaacaatctcaaccgtagtgtttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccatgttttctacaca 2267311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 30423200 - 30423106
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||| || |||||||||| ||||| ||||||| || ||||||||| ||||||||| |||||||||||||||||| |||| ||||||    
T  30423200 aatcaaaacaatctcagccctagtgtttgttgccaagagaaattctctataaaccctagtttgtttgttggcttctaaaccctgttttctacaca 30423106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 3276333 - 3276245
Alignment:
Q  15 aaatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||| | |||||||||| || || || ||||||||| ||||||| | |||||||||||||||||| |||||    
T  3276333 aaatcaaaacaatcccaaccctggagttgttgcaaagaaaaattctctataaaccctagtttttgtgttggcttctaaaccctgttttt 3276245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 16752716 - 16752785
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  16752716 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 16752785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 16757461 - 16757530
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  16757461 aatcaaaacaatcccaaccctagagttgttgtcaagagagattctctataaaccctagtttgtttgttgg 16757530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 25684631 - 25684562
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| |||||||| ||||||  || ||||||||| ||||||||| ||||||    
T  25684631 aatcaaaacaatcccaaccctagagttgttgctaagagagattctctataaaccctagtttgtttgttgg 25684562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 28327896 - 28327827
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  28327896 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 28327827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 4812681 - 4812750
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||| ||| ||||||||| ||||||    
T  4812681 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctatgaaccctagtttgtttgttgg 4812750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 15944861 - 15944774
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||| |||||  |||||||||||| ||||| |||||| ||| ||||||||| ||| ||||| |||| ||||||||||||| |||||    
T  15944861 aatcaaagcaatcagaaccctagtgtttgttgccaagaga-tttctctataaaccctaatttgtttgttagcttctaaaccctgttttt 15944774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 4144877 - 4145080
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgttt 114  Q
    ||||||||||||| ||||||||||||| |||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||    
T  4144877 aatcaaaacaatctcaaccctagtgtttttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacacagtgttt 4144976  T
Q  115 tgtttctaca-ccata---ttctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaatcatgcccaaaaatacaatctgtt 210  Q
    ||||||||||  ||||    ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  4144977 tgtttctacatacataatcatctgatacaaggtttatatttatagtggaaagcatccctcataaaaaggaacaaaatcaggcccaaaaatacgatatgtt 4145076  T
Q  211 tttt 214  Q
    ||||    
T  4145077 tttt 4145080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 21353540 - 21353627
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||| | ||||||| || ||||||||| |||||||||||||||||||||||||||| |||||    
T  21353540 aatcaaaacaatcccaaccctagtgttgttaccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttt 21353627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 25134059 - 25133966
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||| ||||| |||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  25134059 aatcaaaacaatcacaaccatagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacaca 25133966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 9526454 - 9526367
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||| |||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  9526454 aatcaaaacaatcccaaccctagagttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 9526367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 3091300 - 3091394
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||| ||||||||||||| ||| | ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  3091300 aatcaaaacaatctcaaccctagtgtttgttaccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacaca 3091394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 2393476 - 2393555
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||||||||||||| ||| |||||||| || |||||||||  ||||||| |||||||||||||||||    
T  2393476 aatcaaaacaatcccaaccctagtgttattgccaagagaaattctctataaaccttagtttgcatgttggcttctaaacc 2393555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 9521703 - 9521624
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    |||||||||||||||||||||||   |||| | ||||||| || ||||||||| |||||||||||||||| |||||||||    
T  9521703 aatcaaaacaatcccaaccctagaaatgttaccaagagaaattctctataaaccctagtttgtatgttggtttctaaacc 9521624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 14997024 - 14996935
Alignment:
Q  20 aaaacaatcccaaccctagtgttgttg--caagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||||||||||||||||  |   |||||||||| || ||||||| ||||||||| |||||||||||||||||| |||| ||||||    
T  14997024 aaaacaatcccaaccctagtgtttattaccaagagaattctt-tataaaccctagtttgtttgttggcttctaaaccctgttttctacaca 14996935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 46783131 - 46783044
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgcaagaga-atttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||| ||| ||||||||||||| ||||||| ||| | || |||||||||  |||||||| ||||||||||||||||||||||||    
T  46783131 aatcaaaacgatctcaaccctagtgtttgttgcaa-agataattctctataaaccatagtttgtttgttggcttctaaaccctattttt 46783044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 2232585 - 2232516
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||  ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  2232585 aatcaaaacaatcccaaccctaaagttgttgccaagagagattctctataaaccctagtttgtttgttgg 2232516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 2401415 - 2401467
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaac 67  Q
    ||||||||||||| ||||||||||||||||| |||||||| || |||||||||    
T  2401415 aatcaaaacaatctcaaccctagtgttgttgccaagagaaattctctataaac 2401467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 2393578 - 2393632
Alignment:
Q  131 tctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaa 185  Q
    |||||||||||  ||||||||||||||||||| |||||||| || | ||||||||    
T  2393578 tctgatacaaggcttatatttatagtggaaaatatcccttaaaatatggaacaaa 2393632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 19702056 - 19702167
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgtt 113  Q
    ||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||||||| | |||| |||||||||||    
T  19702056 aatcaaaacaatcccaaccctagtgtttgttgccaagagaaattctctataaacgctagtttgtatgttggcttctaaaccttgttttctacacagtgtt 19702155  T
Q  114 ttgtttctacac 125  Q
    ||||||||||||    
T  19702156 ttgtttctacac 19702167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 22352048 - 22352133
Alignment:
Q  18 tcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||||    
T  22352048 tcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttt 22352133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 13467657 - 13467744
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||||| || || || ||||||||| |||||||||||||||||||||||||||| |||||    
T  13467657 aatcaaaacaatcccaaccctagtgttgttgcaaagataaattctctataaaccctagtttgtatgttggcttctaaaccctgttttt 13467744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 3577708 - 3577795
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| || |||||||| |||||    
T  3577708 aatcaaaacaatcccaaccctagtgttgttgcaaagagaaattctctataaaccctagtttgtatgttggtttttaaaccctgttttt 3577795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 17695045 - 17695132
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||| ||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  17695045 aatcaaaacaatcccaaccctagttttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 17695132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 22342995 - 22343082
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||| |||||||||||||||||| ||||||  || ||||||||| |||||||||||||||||||||||||||| |||||    
T  22342995 aatcaaaacaatctcaaccctagtgttgttgccaagagagattctctataaaccctagtttgtatgttggcttctaaaccctgttttt 22343082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 26643164 - 26643085
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||||||||||||||| | |||||||| || ||||||||| ||||||||||||||||||||||||||    
T  26643164 aatcaaaacaatcccaaccctagtgttgtgggcaagagaaattctctataaaccctagtttgtatgttggcttctaaacc 26643085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 26749130 - 26749051
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||||||||||||||| | |||||||| || ||||||||| ||||||||||||||||||||||||||    
T  26749130 aatcaaaacaatcccaaccctagtgttgtgggcaagagaaattctctataaaccctagtttgtatgttggcttctaaacc 26749051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 33215815 - 33215728
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||| |||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||| || |||||    
T  33215815 aatcaaaacaatcacaaccctagtgttgttgcaaagagaaattctctataaaccctagtttgtatgttggcttctaaactctgttttt 33215728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 25466093 - 25466180
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||| ||||| |||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  25466093 aatcaaaacaatctcaaccttagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 25466180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 17036043 - 17035974
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||    
T  17036043 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttgg 17035974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 5166010 - 5166102
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||| ||||||||||||| || ||||   ||||| || ||||||||| |||| ||||||||||||||||||||||| |||| ||||||    
T  5166010 aatcaaaaca-tcccaaccctagtattcttgccttgagaaattctctataaaccctagcttgtatgttggcttctaaaccctgttttctacaca 5166102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 13878715 - 13878646
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  13878715 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 13878646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 13883463 - 13883394
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  13883463 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 13883394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 16785907 - 16785838
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  16785907 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 16785838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 26887418 - 26887487
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  26887418 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 26887487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 31248908 - 31248977
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  31248908 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 31248977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 35201520 - 35201589
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  35201520 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 35201589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 25941632 - 25941554
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgtt-gcaagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||||||||| ||||||  |||||||| || ||||| ||| |||||||| ||||||| |||||||||    
T  25941632 aatcaaaacaatcccaaccctagagttgttaccaagagaaattctctat-aaccctagtttgaatgttggtttctaaacc 25941554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 5166111 - 5166149
Alignment:
Q  131 tctgatacaagatttatatttatagtggaaaacatccct 169  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  5166111 tctgatacaagacttatatttatagtggaaaacatccct 5166149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 12166389 - 12166425
Alignment:
Q  89 taaaccctattttttacacagtgttttgtttctacac 125  Q
    ||||||||||||| |||||||||||||||||||||||    
T  12166389 taaaccctattttctacacagtgttttgtttctacac 12166425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 24542868 - 24542954
Alignment:
Q  16 aatcaaaacaatcccaaccctagtg-ttgttg-caagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||||| |||||| ||||||||  | |||||||||  |||||||  |||||||||||||||| |||||||    
T  24542868 aatcaaaacaatcccaaccctagtgtttgttgccaagagaa-atctctataaaccatagtttg-gtgttggcttctaaaccttattttt 24542954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 12166340 - 12166393
Alignment:
Q  16 aatcaaaacaatcccaaccctagtg-ttgttg-caagagaatttttctataaac 67  Q
    ||||||||||||||||||||||||| |||||| |||||||| || |||||||||    
T  12166340 aatcaaaacaatcccaaccctagtgtttgttgccaagagaaattctctataaac 12166393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 13072175 - 13072361
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgttt 114  Q
    ||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |||||||||||||||||||||||||| | |||| |||||| | ||     
T  13072175 aatcaaaacaatcccaaccctagtgatgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccttgttttctacacaatatt- 13072273  T
Q  115 tgtttctacaccatattctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaatcatgcccaaaaatacaatctgtttttt 214  Q
            ||      ||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||| || ||||||||    
T  13072274 --------ca------tctgatacaaggtttatatctatagtggaaagcatccctcataaaaaggaacaaaatcaagcccaaaaatacgatttgtttttt 13072359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 36771384 - 36771273
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgtt 113  Q
    ||||||||||||| ||||||||||||| ||||| ||||||| || |||  |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  36771384 aatcaaaacaatctcaaccctagtgtttgttgccaagagaaattctcttcaaaccctagtttgtatgttggcttctaaaccctattttctacacagtgtt 36771285  T
Q  114 ttgtttctacac 125  Q
    ||||||||||||    
T  36771284 ttgtttctacac 36771273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 47566481 - 47566370
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgtt 113  Q
    ||||||||||||| ||||||||||||| ||||| |||| || || ||||||||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  47566481 aatcaaaacaatctcaaccctagtgtttgttgccaagataaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacacagtgtt 47566382  T
Q  114 ttgtttctacac 125  Q
    ||||||||||||    
T  47566381 ttgtttctacac 47566370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 18586954 - 18586867
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| |||||||||||||||||    
T  18586954 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctattttt 18586867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 36769467 - 36769356
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgtt 113  Q
    ||||||||||||||||||||||||||| ||||| ||||||| || |||  |||| |||||||||||||||||||||||||| | ||||||||||||||||    
T  36769467 aatcaaaacaatcccaaccctagtgtttgttgccaagagaaattctcttcaaaccctagtttgtatgttggcttctaaaccttgttttttacacagtgtt 36769368  T
Q  114 ttgtttctacac 125  Q
    || |||||||||    
T  36769367 ttatttctacac 36769356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 25699737 - 25699644
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||| |||||||| |||| ||||||    
T  25699737 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttttaaaccctgttttctacaca 25699644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 4558300 - 4558188
Alignment:
Q  15 aaatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgt 112  Q
    |||||||||  | |||| |||||||||| ||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  4558300 aaatcaaaaacaacccagccctagtgtttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacacagtgt 4558201  T
Q  113 tttgtttctacac 125  Q
    |||||||||||||    
T  4558200 tttgtttctacac 4558188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 8529255 - 8529168
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |||||||||||||||| |||||||||||||||||    
T  8529255 aatcaaaacaatcccaaccctagtggtgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctattttt 8529168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 15831129 - 15831042
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||||||| ||||||||||| |||||    
T  15831129 aatcaaaacaatcccaaccctagtgttgttgccaagaaaaattttctataaaccctagtttgtatgttggtttctaaaccctgttttt 15831042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 16638815 - 16638721
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||||||||||||||||| ||||||| ||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  16638815 aatcaaaacaatcccaaccctagtgtttgttgcaaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacaca 16638721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 4570082 - 4569989
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||||||||||||||| |||||| ||||||| || ||||||||| ||||||||||||||||||||||||| || |||| ||||||    
T  4570082 aatcaaaacaatcccaaccctagtgatgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaactctgttttctacaca 4569989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 15312304 - 15312225
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| |||||||||    
T  15312304 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaacc 15312225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 31300412 - 31300325
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||| ||||||| ||||||||||| |||||    
T  31300412 aatcaaaacaatcccaaccctagtgttgttgcaaagagaaattctctataaaccctagtttgaatgttggtttctaaaccctgttttt 31300325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 16489337 - 16489244
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||| ||||| |||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||| ||||||    
T  16489337 aatcaaaacaatctcaaccttagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttctacaca 16489244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 15316947 - 15316859
Alignment:
Q  15 aaatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||| ||||||||||||| ||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  15316947 aaatcaaaacaatccgaaccctagtgttgctgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 15316859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 4556253 - 4556340
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||| ||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||| ||||| ||||||||||| |||||    
T  4556253 aatcgaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtaagttggtttctaaaccctgttttt 4556340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 4884862 - 4884775
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||| ||| ||||||||||||| ||||| || ||||||||| ||| |||||||||||||||||||||||| |||||    
T  4884862 aatcaaaacaatcccacccccagtgttgttgcaaagagaaattctctataaaccctaatttgtatgttggcttctaaaccctgttttt 4884775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 16689134 - 16689221
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||| |||| ||||| |||||||||| ||||| || ||||||||| |||||||| ||||||| ||||||||||| |||||    
T  16689134 aatcaaaacaattccaaacctagagttgttgcaaagagaaattatctataaaccctagtttgaatgttggtttctaaaccctgttttt 16689221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 55822253 - 55822184
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||| ||||| ||||||    
T  55822253 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctaatttgtttgttgg 55822184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 7050451 - 7050511
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagttt 75  Q
    ||||||||||||| ||||| ||||||||||| |||||||| || ||||||||| |||||||    
T  7050451 aatcaaaacaatcacaaccttagtgttgttgccaagagaaattctctataaaccctagttt 7050511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 4558164 - 4558109
Alignment:
Q  131 tctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaa 186  Q
    |||||||||||| |||||||||||||||||| ||||||| | |||  |||||||||    
T  4558164 tctgatacaagacttatatttatagtggaaagcatccctcaaaaattggaacaaaa 4558109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 25614114 - 25614191
Alignment:
Q  16 aatcaaaacaatcccaaccctagtg-ttgtt-gcaagagaatttttctataaacgctagtttgtatgttggcttctaaa 92  Q
    ||||||||||||| ||||||||||| |||||  |||||||| || |||||||||  ||| |||||||||||||||||||    
T  25614114 aatcaaaacaatctcaaccctagtgtttgttaccaagagaaattctctataaaccatag-ttgtatgttggcttctaaa 25614191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 11853537 - 11853468
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||| ||||||||| ||||||| |||||||  || ||||||||| ||||||| | ||||||    
T  11853537 aatcaaaacaatctcaaccctagagttgttgccaagagagattctctataaaccctagtttatttgttgg 11853468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 18537776 - 18537839
Alignment:
Q  131 tctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaatcatgccca 195  Q
    ||||||||||||| ||||||||||||  ||| |||| || |||||  ||||||||||||||||||    
T  18537776 tctgatacaagatctatatttatagt-aaaagcatcactcataaattggaacaaaatcatgccca 18537839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 21369630 - 21369525
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgtt 113  Q
    ||||||||||||| |||||||| |||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  21369630 aatcaaaacaatctcaaccctaatgtttgttgccaagagaatttctctataaaccctagtttgtatgttggcttctaaaccctgttttctacacagtgtt 21369531  T
Q  114 ttgttt 119  Q
    ||||||    
T  21369530 ttgttt 21369525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 25410118 - 25410025
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  25410118 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacaca 25410025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 25351341 - 25351248
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  25351341 aatcaaaacaatctcaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacaca 25351248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 25357035 - 25356942
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||| |||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  25357035 aatcaaaacaatctcaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacaca 25356942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 34547057 - 34547144
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  34547057 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 34547144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 44016855 - 44016949
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||||||||||||||||| ||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  44016855 aatcaaaacaatcccaaccctagtgtttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacaca 44016949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 7464712 - 7464799
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||| ||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||| |||||||| |||||    
T  7464712 aatcaaaacaatccaaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttttaaaccctgttttt 7464799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 42006651 - 42006564
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||||||||||  |||||||| |||||||||||||||||| |||||    
T  42006651 aatcaaaacaatcccaaccctagtgttcttgccaagagaaattttctataaaccatagtttgtttgttggcttctaaaccctgttttt 42006564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 8378698 - 8378777
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||||||||| |||||||| ||||||| || ||||||||| |||||||||||||||| |||||||||    
T  8378698 aatcaaaacaatcccaaccctagagttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaacc 8378777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 44010945 - 44011038
Alignment:
Q  17 atcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||||||||||||||||||| ||||| |||| || || |||||||||  ||||||||||||||||||||||||||| |||| ||||||    
T  44010945 atcaaaacaatcccaaccctagtgtttgttgccaagaaaaattctctataaaccatagtttgtatgttggcttctaaaccctgttttctacaca 44011038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 44144060 - 44144153
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||||||  ||||||||||||||||| |||| || || ||||||||| |||||||||||||||||||||||||| | |||| ||||||    
T  44144060 aatcaaaacaatcataaccctagtgttgttgccaagaaaaattctctataaaccctagtttgtatgttggcttctaaaccttgttttctacaca 44144153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 30246958 - 30246871
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||| |||||||||||| ||||||| || ||||||||| |||||||   |||||||||||||||||| |||||    
T  30246958 aatcaaaacaatcccaaccgtagtgttgttgccaagagaaattctctataaaccctagttttgttgttggcttctaaaccctgttttt 30246871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 44512719 - 44512806
Alignment:
Q  16 aatcaaaacaatcccaaccc-tagtgttgttgcaagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||| ||||||||||||||   || || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  44512719 aatcaaaacaatcccaacccctagtgttgttgcaaagaaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 44512806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 2120880 - 2120807
Alignment:
Q  22 aacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||| |||||||| |||||||  | ||||||||| ||||||||||||||||||||||||||    
T  2120880 aacaatcccaaccctagagttgttgccaagagaaaatctctataaaccctagtttgtatgttggcttctaaacc 2120807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 1099628 - 1099700
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggctt 87  Q
    ||||||||||||  |||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||    
T  1099628 aatcaaaacaatttcaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggctt 1099700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 7069768 - 7069699
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  7069768 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 7069699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 7074775 - 7074706
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  7074775 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 7074706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 15541189 - 15541258
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  15541189 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 15541258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 25405381 - 25405312
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  25405381 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 25405312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 6067399 - 6067474
Alignment:
Q  20 aaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||||||||| ||| | ||||||||| | |||||||| ||||||||| ||||||||||||||||    
T  6067399 aaaacaatcccaaccctagtgtttgttaccaagagaattct-ctataaaccctagtttgtttgttggcttctaaacc 6067474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 3320244 - 3320312
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttg 83  Q
    ||||||||||||||||||||||| ||||||| ||| |||  || ||||||||| ||||||||| |||||    
T  3320244 aatcaaaacaatcccaaccctagagttgttgccaatagagattctctataaaccctagtttgtttgttg 3320312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 3324992 - 3325060
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttg 83  Q
    ||||||||||||||||||||||| ||||||| ||| |||  || ||||||||| ||||||||| |||||    
T  3324992 aatcaaaacaatcccaaccctagagttgttgccaatagagattctctataaaccctagtttgtttgttg 3325060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 44011047 - 44011102
Alignment:
Q  131 tctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaa 186  Q
    ||||||||||| ||||||||||||||||||| ||||||| | |||  |||||||||    
T  44011047 tctgatacaaggtttatatttatagtggaaagcatccctaaaaaattggaacaaaa 44011102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 44016958 - 44017013
Alignment:
Q  131 tctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaa 186  Q
    ||||||||||| ||||||||||||||||||| ||||||| | |||  |||||||||    
T  44016958 tctgatacaaggtttatatttatagtggaaagcatccctaaaaaattggaacaaaa 44017013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 17943525 - 17943432
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||||||||||||||||||||||||| ||||||| || |||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  17943525 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccatagtttgtatgttggcttctaaaccctattttctacaca 17943432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 38190985 - 38190892
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||||||||||||||||||||||||| ||||||| || | ||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  38190985 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattatttataaaccctagtttgtatgttggcttctaaaccctgttttctacaca 38190892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 27517833 - 27517920
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  27517833 aatcaaaacaatcccaaccctagtgttgttgcaaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 27517920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 35894455 - 35894542
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  35894455 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 35894542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 12781415 - 12781508
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||| ||||||| ||||||||||| |||| ||||||    
T  12781415 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgaatgttggtttctaaaccctgttttctacaca 12781508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 37170948 - 37171033
Alignment:
Q  18 tcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||| |||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||||    
T  37170948 tcaaaacaatcccaaccctggtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttt 37171033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 17932622 - 17932535
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| || |||||||| |||||    
T  17932622 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttataaaccctgttttt 17932535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 20050216 - 20050303
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||| ||||| ||||| |||||    
T  20050216 aatcaaaacaatcccaaccctagagttgttgcaaagagaaattttctataaaccctagtttgtatgttggtttctataccctgttttt 20050303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 22712710 - 22712797
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||| |||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  22712710 aatcaaaacaatcccaaccctagagttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 22712797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 30478982 - 30478895
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| |||||||| || |||||    
T  30478982 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaactctgttttt 30478895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 33674599 - 33674686
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||||||||||| |||||||| || |||||||||  |||||| |||||||| ||||||||||| |||||    
T  33674599 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccatagtttatatgttggtttctaaaccctgttttt 33674686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 20054959 - 20055046
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||| |||||||| ||||||| || |||||||||  ||||||||||||||| ||||| ||||| |||||    
T  20054959 aatcaaaacaatcccaaccctagagttgttgcaaagagaaattctctataaaccttagtttgtatgttggtttctataccctgttttt 20055046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 22717419 - 22717498
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||||||||  |||||||| ||||||| || ||| ||||| |||||||||||||||| |||||||||    
T  22717419 aatcaaaacaatcccaaccctatagttgttgctaagagaaattctctgtaaaccctagtttgtatgttggtttctaaacc 22717498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 2736193 - 2736124
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  2736193 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 2736124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 2740929 - 2740860
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  2740929 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 2740860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 17462424 - 17462355
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  17462424 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 17462355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 39686971 - 39686902
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  39686971 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 39686902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 45567397 - 45567328
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  45567397 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 45567328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 39680033 - 39679964
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| ||| |||  || ||||||||| ||||||||| ||||||    
T  39680033 aatcaaaacaatcccaaccctagagttgttgccaaaagagattctctataaaccctagtttgtttgttgg 39679964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 11962627 - 11962814
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgttt 114  Q
    ||||||||||||| |||||||||||||||||| ||||||| || ||||| |||  ||||||||||||||||||||||||||| |||| |||||| | ||     
T  11962627 aatcaaaacaatctcaaccctagtgttgttgccaagagaaattctctatgaaccatagtttgtatgttggcttctaaaccctgttttctacacaatatt- 11962725  T
Q  115 tgtttctacaccatattctgatacaagatttatatttatagtggaaaacatcccttat-aaaaaggaacaaaatcatgcccaaaaatacaatctgttttt 213  Q
               ||||   ||||||||| ||||||||||||||||||| ||||||| || ||||||||||||||||| || ||||||||  ||||||||||    
T  11962726 -----------cata---tgatacaaggtttatatttatagtggaaagcatccctcataaaaaaggaacaaaatcaggctcaaaaatatgatctgttttt 11962811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 42238291 - 42238204
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||| |||||    
T  42238291 aatcaaaacaatcccaaccctagtgttgttgcaaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttt 42238204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 20718491 - 20718356
Alignment:
Q  86 ttctaaaccctattttttacacagtgttttgtttctacaccatattc---tgatacaagatttatatttatagtggaaaacatcccttataaaaaggaac 182  Q
    |||||||||||  ||| |||||| |||||||||||||||| ||||||   |||| |||| ||||||||||||||||||| |||| |||||||||||||||    
T  20718491 ttctaaaccctgatttctacacaatgttttgtttctacacaatattcatctgatgcaaggtttatatttatagtggaaagcatctcttataaaaaggaac 20718392  T
Q  183 aaaatcatgcccaaaaatacaatctgttttttctgta 219  Q
    ||||||| ||| |||||||  |||| |||||||||||    
T  20718391 aaaatcaggccaaaaaatatgatct-ttttttctgta 20718356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 1240416 - 1240329
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaa-gagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||||| |||||  | ||||||||| |||||||||||||||||||||||||||| |||||    
T  1240416 aatcaaaacaatcccaaccctagtgttgttgcaaagagaaaatatctataaaccctagtttgtatgttggcttctaaaccctgttttt 1240329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 22672822 - 22672735
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  22672822 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 22672735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 31782651 - 31782738
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctatttt 101  Q
    ||||||||||||||||||||||||||| ||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| ||||    
T  31782651 aatcaaaacaatcccaaccctagtgtttgttgccaagagaaattatctataaaccctagtttgtatgttggcttctaaaccctgtttt 31782738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 40222751 - 40222672
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||| |||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||    
T  40222751 aatcaaaacaatctcaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaacc 40222672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 25445480 - 25445401
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||||||||| |||||||| ||||||| || ||||||||| |||||||||||||||| |||||||||    
T  25445480 aatcaaaacaatcccaaccctagagttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaacc 25445401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 10627347 - 10627257
Alignment:
Q  20 aaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||| |||||||||||| ||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  10627347 aaaacaatcctaaccctagtgtttgttgctaagagaaattctctataaacactagtttgtatgttggcttctaaaccctgttttctacaca 10627257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 16093484 - 16093578
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||  ||||||||||||||||| ||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  16093484 aatcaaaaagatcccaaccctagtgtttgttgccaagagaaattatctataaaccctagtttgtatgttggcttctaaaccctgttttctacaca 16093578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 2298195 - 2298274
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| |||||||||||||||| |||||||||    
T  2298195 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtatgttggtttctaaacc 2298274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 25452483 - 25452404
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    |||||||||||||||||| |||| |||||||| ||||||| || ||||||||| |||||||||||||||| |||||||||    
T  25452483 aatcaaaacaatcccaacgctagagttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaacc 25452404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 35385646 - 35385724
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttggcttctaaac 93  Q
    ||||||||||||||||||||||| ||||||| |||||||| || ||||||||| |||||||||||||| | ||||||||    
T  35385646 aatcaaaacaatcccaaccctagagttgttgccaagagaaattctctataaaccctagtttgtatgttagtttctaaac 35385724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 26406667 - 26406760
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgtt-gttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||| | |||||||| ||||||||| |||||| ||||||||||| |||| ||||||    
T  26406667 aatcaaaacaatctcaaccctagtgtttgttgccaagagaattct-ctataaaccctagtttgtttgttggtttctaaaccctgttttctacaca 26406760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 28786392 - 28786307
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgcaagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||| |||||||||||||||||||||||||| || | ||| ||| || |||||||||||| |||||||| ||| |||||    
T  28786392 aatcaaaacaattccaaccctagtgttgttgcaagagaagttctttat-aacccttgtttgtatgttgccttctaaatcctgttttt 28786307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 17841443 - 17841530
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg--caagagaatttttctataaacgctagtttgtatgttggcttctaaaccctatttt 101  Q
    ||||||||||||| |||||||||| |||||   |||||||| || ||||||||| |||||||||||| ||| ||||||||||| ||||    
T  17841443 aatcaaaacaatctcaaccctagtattgtttgccaagagaaattctctataaaccctagtttgtatgatggtttctaaaccctgtttt 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 1170799 - 1170730
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  1170799 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 1170730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 34034589 - 34034655
Alignment:
Q  131 tctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaatcatgcccaaaaa 199  Q
    ||||||||||| |||||||||||||||  || ||||||||| |||| |||||||| ||| |||||||||    
T  34034589 tctgatacaaggtttatatttatagtg--aagcatcccttaaaaaatggaacaaattcaagcccaaaaa 34034655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 25838095 - 25838002
Alignment:
Q  16 aatcaaaacaatcccaaccctagtg-ttgtt-gcaagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||| ||||||||||| |||||  |||||||| || |||||||||  |||||| | |||||||||||||||| | |||| ||||||    
T  25838095 aatcaaaacaatctcaaccctagtgtttgttaccaagagaa-ttctctataaaccatagtttctttgttggcttctaaaccttgttttctacaca 25838002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 10612972 - 10613059
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| |||||||||||||||||    
T  10612972 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctattttt 10613059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 10896993 - 10896906
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| |||||||||||||||||    
T  10896993 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctattttt 10896906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 11079505 - 11079424
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccct 96  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  11079505 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccct 11079424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 5858534 - 5858447
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  5858534 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 5858447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 29914147 - 29914234
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||| ||||||||||||||||||| |||||    
T  29914147 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgaatgttggcttctaaaccctgttttt 29914234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 47878365 - 47878452
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  47878365 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 47878452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 27762180 - 27762261
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccct 96  Q
    ||||||||||||| |||||||||||||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  27762180 aatcaaaacaatctcaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccct 27762261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 38002857 - 38002760
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgt 112  Q
    ||||||||||||| |||||||||||||||||| ||||||| || ||||||||| ||||||||||||||| |||||||| ||| |||| ||||||||||    
T  38002857 aatcaaaacaatctcaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttgacttctaaatcctgttttctacacagtgt 38002760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 47883076 - 47883169
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||||||||| |||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||| ||| |||| ||||||    
T  47883076 aatcaaaacaatcccaaccatagtgttgttgccaagagaaattatctataaaccctagtttgtatgttggcttctaaatcctgttttctacaca 47883169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 3329881 - 3329770
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttg-ttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacacagtgtt 113  Q
    |||||||||| ||||||||||||||||  |||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| |  ||| ||||    
T  3329881 aatcaaaacattcccaaccctagtgtttattgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctctacaatgtt 3329782  T
Q  114 ttgtttctacac 125  Q
    ||||||||||||    
T  3329781 ttgtttctacac 3329770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 4535602 - 4535515
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||| |||||||||||||||||||| ||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||    
T  4535602 aatcaaaacaaacccaaccctagtgttgttgccaagagaaattctctatgaaccctagtttgtatgttggcttctaaaccctgttttt 4535515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 54193209 - 54193126
Alignment:
Q  20 aaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  54193209 aaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 54193126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 22626178 - 22626265
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||| |||||||| ||||||| || || |||||| |||||||||||||||| ||||||||||| |||||    
T  22626178 aatcaaaacaatcccaaccctagagttgttgccaagagaaattctccataaaccctagtttgtatgttggtttctaaaccctgttttt 22626265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 10595228 - 10595321
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||||||| ||||||||||||||||| |||| || || ||||||||| |||||||||||||||| ||||||||| | |||| ||||||    
T  10595228 aatcaaaacaatccaaaccctagtgttgttgccaagataaattctctataaaccctagtttgtatgttggtttctaaacctttttttctacaca 10595321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 10949454 - 10949546
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||||||||  |||||||| |||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  10949454 aatcaaaacaatcg-aaccctagagttgttgccaagagaaattctctataaaccctagtttgtatgttggcttctaaaccctgttttctacaca 10949546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 54188492 - 54188409
Alignment:
Q  20 aaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||| |||||||||||||| ||||||| || |||||||||  ||||||||||||||| ||||||||||| |||||    
T  54188492 aaaacaatcccaaacctagtgttgttgccaagagaaattctctataaaccttagtttgtatgttggtttctaaaccctgttttt 54188409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 16462191 - 16462112
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||||||||||||||||||  |||||||| ||||||| || ||| ||||| |||||||||||||||| |||||||||    
T  16462191 aatcaaaacaatcccaaccctatagttgttgctaagagaaattctctgtaaaccctagtttgtatgttggtttctaaacc 16462112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 13893445 - 13893356
Alignment:
Q  20 aaaacaatcccaaccctagtg-ttgttg-caagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    ||||||||||||||||||||| |||||| |||||||| || ||||||||| ||||||| ||||||| |||||||||| | |||| ||||||    
T  13893445 aaaacaatcccaaccctagtgtttgttgccaagagaa-ttctctataaaccctagtttttatgttgacttctaaaccttgttttctacaca 13893356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 20031512 - 20031595
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||  |||||||||     |||||||||||||| |||||    
T  20031512 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaagcctagtttgtc----ggcttctaaaccctgttttt 20031595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 6303298 - 6303229
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  6303298 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 6303229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 10094268 - 10094337
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  10094268 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 10094337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 10100285 - 10100354
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  10100285 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 10100354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 10201148 - 10201217
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  10201148 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 10201217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 10208194 - 10208263
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  10208194 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 10208263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 27544261 - 27544192
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  27544261 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 27544192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 7417732 - 7417666
Alignment:
Q  131 tctgatacaagatttatatttatagtggaaaacatcccttataaaaaggaacaaaatcatgcccaaaa 198  Q
    ||||||||||| ||||||||||||||||||| ||||||| | |||  ||||||||| |||||||||||    
T  7417732 tctgatacaaggtttatatttatagtggaaagcatccctcaaaaattggaacaaaa-catgcccaaaa 7417666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 48390446 - 48390501
Alignment:
Q  47 caagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||| || ||||||||| ||||||||||||| |||||||||||||| |||||    
T  48390446 caagagaaattctctataaaccctagtttgtatgtcggcttctaaaccctgttttt 48390501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 7418025 - 7417964
Alignment:
Q  47 caagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttttacaca 108  Q
    |||||||| || | ||||||| ||||||| |||||||||||||||||||  |||| ||||||    
T  7418025 caagagaaattctttataaaccctagtttttatgttggcttctaaaccccgttttctacaca 7417964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 16313 - 16226
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||| ||||||||||||||||||| |||||    
T  16313 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgaatgttggcttctaaaccctgttttt 16226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 188436 - 188523
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  188436 aatcaaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 188523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 17183 - 17267
Alignment:
Q  19 caaaacaatcccaaccctagtgttgttgc-aagagaatttttctataaacgctagtttgtatgttggcttctaaaccctattttt 102  Q
    ||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||| ||||||||||| |||||    
T  17183 caaaacaatcccaaccctagtgttgttgccaagagaaattctctataaaccctagtttgtatgttggtttctaaaccctgttttt 17267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 31129 - 31060
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  31129 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 31060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 224807 - 224738
Alignment:
Q  16 aatcaaaacaatcccaaccctagtgttgttg-caagagaatttttctataaacgctagtttgtatgttgg 84  Q
    ||||||||||||||||||||||| ||||||| |||||||  || ||||||||| ||||||||| ||||||    
T  224807 aatcaaaacaatcccaaccctagagttgttgccaagagagattctctataaaccctagtttgtttgttgg 224738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1764 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 94
Target Start/End: Complemental strand, 1391 - 1345
Alignment:
Q  48 aagagaatttttctataaacgctagtttgtatgttggcttctaaacc 94  Q
    ||||||| || ||||||||| |||||||||||||||| |||||||||    
T  1391 aagagaaattctctataaaccctagtttgtatgttggtttctaaacc 1345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University