View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_9 (Length: 471)
Name: NF20250_low_9
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 125 - 274
Target Start/End: Complemental strand, 45119222 - 45119073
Alignment:
| Q |
125 |
aagttcaagaatccatgtacagtcaaataagttcaagaatcaagttcaagaatccatgaacaaaccactcaactaccagaccacaaaatcaatcaaaagt |
224 |
Q |
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| T |
45119222 |
aagttcaagaatccatgtacaatcaaataagttcaggaatcaagttcaagaatccatgaacaaaccactcaactaccagaccacaaaatcaatcaaaagt |
45119123 |
T |
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| Q |
225 |
gagattgatttcatttcaaaagtcaacccatagagcagttatttggtcat |
274 |
Q |
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| T |
45119122 |
gagattgatttcatttcaaaagtcaacccatagaacagttatttgatcat |
45119073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 338 - 456
Target Start/End: Complemental strand, 45119009 - 45118891
Alignment:
| Q |
338 |
cagcagagtagttccacaaccgaaaacacccgatgcaagttaaaccaaccagcagtccttggtcaagatagaaagctatacaaaccgaccagtcaacata |
437 |
Q |
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| T |
45119009 |
cagcagagtagttccacaaccgaaaacatctgatgcaagttaaaccaaccagcagtccttggtcaagatagaaagctatacaaactgaccagtcaacata |
45118910 |
T |
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| Q |
438 |
aattaactaacaacttatt |
456 |
Q |
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| T |
45118909 |
aattaactaacaacttatt |
45118891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 45121357 - 45121232
Alignment:
| Q |
1 |
agagcgaagacacctaacgagcatttcaagaaaataatattaatttcatattcaaacagcttattaattgacagaccttagacagtcacatcatgttatt |
100 |
Q |
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| T |
45121357 |
agagcgaagacacctaacaagcatttcaa----acaatattaatttcatattcaaacaacttattaattcacagaccttagacaatcacatcatgttatt |
45121262 |
T |
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| Q |
101 |
ataaattataattcctatgaaatcaagttc |
130 |
Q |
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| T |
45121261 |
ataaattataattcctatgaaatcaagttc |
45121232 |
T |
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