View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20251_high_6 (Length: 254)
Name: NF20251_high_6
Description: NF20251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20251_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 27706893 - 27706674
Alignment:
| Q |
16 |
atattaacacccactattcaattcaataatgcgtctttatcttccaaaagnnnnnnncgtccatattttgaacttgaggtccgaacggttaatacatcaa |
115 |
Q |
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| T |
27706893 |
atattaacacccactattcaattcaataatgcgtctttatcttccaaaagaaaaaaacttccatattttgaacttgaggtcagaacgattaatacgtcaa |
27706794 |
T |
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| Q |
116 |
ttatccaaaaatattgaatatccttagacagttacctgactcgggcaggtcaatgtccttagacagttaccacacaaacaaagggacctagccagtcctt |
215 |
Q |
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| T |
27706793 |
ttatccaaaaatattgaatatccttagacagttacctgactcgggcaggtcaatgtccttagacagttactacaccaacaaagggacctagccagtcctt |
27706694 |
T |
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| Q |
216 |
ccaaaaatttgttaggtaga |
235 |
Q |
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|||||||||||||||||||| |
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| T |
27706693 |
ccaaaaatttgttaggtaga |
27706674 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 44032228 - 44032279
Alignment:
| Q |
149 |
acctgactcgggcaggtcaatgtccttagacagttaccacacaaacaaaggg |
200 |
Q |
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| T |
44032228 |
acctgagtcgggcaggtcaatgcccttagacagttaccacaccaacaaaggg |
44032279 |
T |
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