View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20251_low_1 (Length: 592)
Name: NF20251_low_1
Description: NF20251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20251_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 7 - 581
Target Start/End: Complemental strand, 14201660 - 14201086
Alignment:
| Q |
7 |
gcagcacagatagatttgaaggcgccataccaaaatccacagcaccttcccctgttttctccttcatatacagttcactcaactcacagacacaatcatc |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| |
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| T |
14201660 |
gcagcacaaatagatttgaaggcgccataccaaaatccacagcaccttcccctgttttctccttcatatacagtttactcaactcatagacccaatcatc |
14201561 |
T |
|
| Q |
107 |
atccaaacctaaactgaaccattctcaatccacatccgaacccgaacctatcatgatcggactctctgaacccgcttcgggttctcccaaatccaccatc |
206 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14201560 |
atccaaacctaaactgaacctttctcaatccacatccgaacccgaacctatcatgatcggactctctgaacccgcttcgggttctcccaaatccaccatc |
14201461 |
T |
|
| Q |
207 |
aaattcctctgtagctatggtggcaaaatcctcccccgttacccggatggcaaactccgttacctcggtggccataatcgcgttctctccgttgatcgct |
306 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14201460 |
aaattcctctgtagctatggtggcaaaatcctcccccgttacccggatggcaaactccgttacctcggtggccataatcgcgttctctccgttgatcgct |
14201361 |
T |
|
| Q |
307 |
ctatacaattctccggtcagtattattagatgtaatagttagttacaataattagttcaatttgaaattgattttgaagctgtttttgttacagaactgt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14201360 |
ctatacaattctccggtcagtattattagatgtaatagttagttacaataattagttcaatttgaaattgattttgaagctgtttttgttacagaactgt |
14201261 |
T |
|
| Q |
407 |
tattgaagctgaaagagctctgcagttcatccgtaacgcaacttcgctgtcagttacccgctgaagacctcgacgctttggtttccatcacctccgacga |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14201260 |
tattgaagctgaaagagctctgcagttcatccgtaacgcaacttcgctgtcagttacctgctgaagacctcgacgctttggtttccatcacctccgacga |
14201161 |
T |
|
| Q |
507 |
agatctcatcaatctaatcgaagaatatgatcgtactgcatcaccacaatcacagttaaagatcaaagccttcat |
581 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14201160 |
agatctcatcaatctaatcgaagaatatgatcgtactgcatcaccacaatcacagttaaagatcaaagccttcat |
14201086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 363
Target Start/End: Complemental strand, 37701816 - 37701778
Alignment:
| Q |
325 |
agtattattagatgtaatagttagttacaataattagtt |
363 |
Q |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
37701816 |
agtattattagttgtaatagttagttacaataattagtt |
37701778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 330 - 363
Target Start/End: Original strand, 29051289 - 29051322
Alignment:
| Q |
330 |
tattagatgtaatagttagttacaataattagtt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
29051289 |
tattagatgtaatagttagttacaataattagtt |
29051322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 3997280 - 3997247
Alignment:
| Q |
330 |
tattagatgtaatagttagttacaataattagtt |
363 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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| T |
3997280 |
tattagatgtaacagttagttacaataattagtt |
3997247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 363
Target Start/End: Original strand, 37864101 - 37864134
Alignment:
| Q |
330 |
tattagatgtaatagttagttacaataattagtt |
363 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
37864101 |
tattagatgtaatagttggttacaataattagtt |
37864134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 362
Target Start/End: Original strand, 3320660 - 3320688
Alignment:
| Q |
334 |
agatgtaatagttagttacaataattagt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
3320660 |
agatgtaatagttagttacaataattagt |
3320688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 357
Target Start/End: Complemental strand, 42603706 - 42603678
Alignment:
| Q |
329 |
ttattagatgtaatagttagttacaataa |
357 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42603706 |
ttattagatgtaatagttagttacaataa |
42603678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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