View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20251_low_2 (Length: 583)
Name: NF20251_low_2
Description: NF20251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20251_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 7 - 565
Target Start/End: Original strand, 43741656 - 43742213
Alignment:
| Q |
7 |
ggagcagagagatgtgtgaagacgcggcgtttgtggcggcgatactgaataagattcggaatgtatcgaacgttgcgacggagcacgcagtaacgacgct |
106 |
Q |
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| T |
43741656 |
ggagaagagagatgtgtgaagacgcggcgtttgtggcggcgatactgaataagattcggaatgtatcgaacgttgcgacggagcacgcagtaacgacgct |
43741755 |
T |
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| Q |
107 |
gtggagtgtttgttatctgtttcgcgatcagaaagcacaagaagcggttacgatggcaaatggattaacgaagatattgttgctaatacagagtaattgt |
206 |
Q |
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| T |
43741756 |
gtggagtgtttgttatctgtttcgcgatcaaaaagcacaagaagcggttacgatggcaaatggattaacgaagatattgttgctaatacagagtaattgt |
43741855 |
T |
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| Q |
207 |
tctccacaagttcgccaaatgtgtacggatttgcttaagatttttcgtgttaattctaaatcgtgtctttcttcttatgataccaaaacttcacatatta |
306 |
Q |
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| T |
43741856 |
tctccacaagttcgccaaatgtgtacggatttgcttaagatttttcgggttaattctaaatcgtgtctttcttcttatgataccaaaacttcacatatta |
43741955 |
T |
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| Q |
307 |
tgcctttttaatctattatggagattggagatactatatagtttactatttttatttttcaaaaatggtgtaaatggaaagaaattttgttagtcaatag |
406 |
Q |
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| T |
43741956 |
tgcctttttaatctattatggagattggagatactatatagtttactatttttatttttcaaatatggtgtaaatggaaagaaattttgttagtcaatag |
43742055 |
T |
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| Q |
407 |
acccnnnnnnntataaagagccaaattacgagattgttgagcaaatgcattggtaaattttatttagctagtagttatatgcttaaatcaagtgttttgg |
506 |
Q |
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| T |
43742056 |
accc-aaaaaatataaagagccaaattacgagattgttgagcaaatgcattggtaaattttatttagctagtagttatatgcttaaatcaagtgttttgg |
43742154 |
T |
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| Q |
507 |
aattttgtggtttaaggggcttgttaaatttattttcaaatgatcaagtgtgtcaaaac |
565 |
Q |
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| T |
43742155 |
aattttgtggtttaaggggcttgttaaatttattttcaaatgatcaagtgtgtcaaaac |
43742213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 81 - 315
Target Start/End: Original strand, 38936241 - 38936475
Alignment:
| Q |
81 |
gcgacggagcacgcagtaacgacgctgtggagtgtttgttatctgtttcgcgatcagaaagcacaagaagcggttacgatggcaaatggattaacgaaga |
180 |
Q |
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| T |
38936241 |
gcgacggagcacgcggttacaatactatggagtgtgtgttatttatttcgtgatcaaaaggcgcaagaagctgttacgaaagcgaatggattaacgaaga |
38936340 |
T |
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| Q |
181 |
tattgttgctaatacagagtaattgttctccacaagttcgccaaatgtgtacggatttgcttaagatttttcgtgttaattctaaatcgtgtctttcttc |
280 |
Q |
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| T |
38936341 |
ttttgcttctgatgcaaagtaattgttcgccacaagttcgtcaaatgtctgtagatttgcttaagatttttcgtgttaattctaagtcttgtctttcttc |
38936440 |
T |
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| Q |
281 |
ttatgataccaaaacttcacatattatgccttttt |
315 |
Q |
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| T |
38936441 |
gtatgataccaaaactactcatattatgccatttt |
38936475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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