View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20251_low_3 (Length: 320)
Name: NF20251_low_3
Description: NF20251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20251_low_3 |
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| [»] scaffold0180 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: scaffold0180 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0180
Description:
Target: scaffold0180; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 93 - 302
Target Start/End: Complemental strand, 22558 - 22349
Alignment:
| Q |
93 |
tcaagaattgaatctagaaaacccctactctaaatccggattcaacctcataaattaaaaaatctcatgtttggacatagagacaatatacaaggatttg |
192 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
22558 |
tcaagaattgaatctagaaaacccctactctaaatccggattcaacctcataaattaaaaa-tctcatgtttggacatagagacaatatacaaggatttg |
22460 |
T |
|
| Q |
193 |
aaaaatattattaaccc-attttttcaaaaccaaattcgatctcagctaattctattataaaatccattttttcttcttatgagttaaacatggtggtgg |
291 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
22459 |
aaaaatattattaaccccattttttcaaaaccaaattcgatctcagctaattctattataaaacccattttttcttcttatgagttaaacatggtcgtgg |
22360 |
T |
|
| Q |
292 |
tggtaggtatg |
302 |
Q |
| |
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||||||||||| |
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| T |
22359 |
tggtaggtatg |
22349 |
T |
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Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 93 - 302
Target Start/End: Original strand, 46740197 - 46740408
Alignment:
| Q |
93 |
tcaagaattgaatctagaaaacccctactctaaatccggattcaacctcataaattaaaaaatctcatgtttggacata--gagacaatatacaaggatt |
190 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
46740197 |
tcaagaattgaaactagaaaacccctactctaaatccggattcaacctcataaattaaaaaatatcatgtttggacatatagagacaatatacaaggatt |
46740296 |
T |
|
| Q |
191 |
tgaaaaatattattaacccattttttcaaaaccaaattcgatctcagctaattctattataaaatccattttttcttcttatgagttaaacatggtggtg |
290 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46740297 |
tgaaaaatattattaacccattttttcaaaatcaaattcgatctcagctaattctattataaaacccattttttcttcttatgagttaaacatggtggtg |
46740396 |
T |
|
| Q |
291 |
gtggtaggtatg |
302 |
Q |
| |
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|||||||||||| |
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| T |
46740397 |
gtggtaggtatg |
46740408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 102 - 302
Target Start/End: Complemental strand, 39413173 - 39412962
Alignment:
| Q |
102 |
gaatctagaaaacccctactctaaatccggattcaacctcataaattaaaaaatctcatgtttg----gacatagagaca---atatacaaggatttgaa |
194 |
Q |
| |
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||||||||||||| || ||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
39413173 |
gaatctagaaaactcc-actataaatccggattcaacctcatgaatt-aaaaatctcatgtttgcattcacatagagacaatgatatataaggatttgaa |
39413076 |
T |
|
| Q |
195 |
aaatattattaacccattttttcaaaaccaaattcga------tctcagctaattctattataaaatccattttttcttcttatgagttaaacatggtgg |
288 |
Q |
| |
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||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
39413075 |
aaacattattaacccattttttcaaaaccaatttcgatctaagtctaagctaattctattatgaaaaccattttaacttcttatgagttaaacatggtgg |
39412976 |
T |
|
| Q |
289 |
tggtggtaggtatg |
302 |
Q |
| |
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||||||||| |||| |
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| T |
39412975 |
tggtggtagttatg |
39412962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 102 - 302
Target Start/End: Original strand, 18605498 - 18605710
Alignment:
| Q |
102 |
gaatctagaaaacccctactctaaatccggattcaacctcataaattaaaaaatctcatgtttg----gacatagagaca---atatacaaggatttgaa |
194 |
Q |
| |
|
||||||||||||| || ||| ||||||| ||||||||||||| |||| |||||||||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
18605498 |
gaatctagaaaactcccactataaatccagattcaacctcatgaatt-aaaaatctcatgtttgcattcacatagagacaatgatatataaggatttgaa |
18605596 |
T |
|
| Q |
195 |
aaatattattaacccattttttcaaaaccaaattcga------tctcagctaattctattataaaatccattttttcttcttatgagttaaacatggtgg |
288 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
18605597 |
aaacattattaacccattttttcaaaaccaatttcgatctaagtctaagctaattctattatgaaaaccattttaatttcttatgagttaaacatggtgg |
18605696 |
T |
|
| Q |
289 |
tggtggtaggtatg |
302 |
Q |
| |
|
||||||||| |||| |
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| T |
18605697 |
tggtggtagttatg |
18605710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 102 - 302
Target Start/End: Complemental strand, 32538054 - 32537842
Alignment:
| Q |
102 |
gaatctagaaaacccctactctaaatccggattcaacctcataaattaaaaaatctcatgtttg----gacatagagaca---atatacaaggatttgaa |
194 |
Q |
| |
|
||||||||||||| || ||| |||||||||| ||||||| || |||| |||||||||||||||| ||||||||||| ||||| ||||||||||| |
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| T |
32538054 |
gaatctagaaaactcccactataaatccggaatcaaccttatgaatt-aaaaatctcatgtttgcattcacatagagacaatgatatataaggatttgaa |
32537956 |
T |
|
| Q |
195 |
aaatattattaacccattttttcaaaaccaaattcga------tctcagctaattctattataaaatccattttttcttcttatgagttaaacatggtgg |
288 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
32537955 |
aaacattattaacccattttttcaaaaccaatttcgatcaaagtctaagctaattctattatgaaaaccattttaacttcttatgagttaaacatggtgg |
32537856 |
T |
|
| Q |
289 |
tggtggtaggtatg |
302 |
Q |
| |
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||||||||| |||| |
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| T |
32537855 |
tggtggtagttatg |
32537842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 102 - 302
Target Start/End: Complemental strand, 33687333 - 33687123
Alignment:
| Q |
102 |
gaatctagaaaacccctactctaaatccggattcaacctcataaattaaaaaatctcatgtttgga--catagagacaat---atacaaggatttgaaaa |
196 |
Q |
| |
|
||||||||||||| || ||| ||||| ||||||||||||||| ||||||||| ||||||||||| | || || |||||| ||| ||||||||||||| |
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|
| T |
33687333 |
gaatctagaaaactcccactataaattcggattcaacctcatgaattaaaaa-tctcatgtttgcattcacagtgacaatgatatataaggatttgaaaa |
33687235 |
T |
|
| Q |
197 |
atattattaacccattttttcaaaaccaaattcgatc------tcagctaattctattataaaatccattttttcttcttatgagttaaacatggtggtg |
290 |
Q |
| |
|
| |||||||||||| |||||||||||||| ||||||| | ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
33687234 |
acattattaacccactttttcaaaaccaatttcgatcaaagtctaagctaattctattatgaaaaccattttaacttcttatgagttaaacatggtggtg |
33687135 |
T |
|
| Q |
291 |
gtggtaggtatg |
302 |
Q |
| |
|
||||||| |||| |
|
|
| T |
33687134 |
gtggtagttatg |
33687123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 63979 - 64100
Alignment:
| Q |
103 |
aatctagaaaacccctactctaaatccggattcaacctcataaattaaaaaatctcatgtttg----gacatagagaca---atatacaaggatttgaaa |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||| |||||||||||||| ||| |
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|
| T |
63979 |
aatctagaaaaccccaactctaaatccggattcaacctcatgaattaaaaaa-ctcatgcttgcattcacatagagacaatgatatacaaggattttaaa |
64077 |
T |
|
| Q |
196 |
aatattat-taacccattttttc |
217 |
Q |
| |
|
|| ||||| ||||||||||||| |
|
|
| T |
64078 |
aacattatggaacccattttttc |
64100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 42112027 - 42112067
Alignment:
| Q |
100 |
ttgaatctagaaaacccctactctaaatccggattcaacct |
140 |
Q |
| |
|
|||||||||||||||||| |||| |||| |||||||||||| |
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|
| T |
42112027 |
ttgaatctagaaaacccccactcaaaattcggattcaacct |
42112067 |
T |
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