View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20252_high_1 (Length: 340)
Name: NF20252_high_1
Description: NF20252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20252_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 6495651 - 6495333
Alignment:
| Q |
17 |
ttattccaccaatcatcttaattgtaacgaatgaaaagtggccaatgatctgactcttctttcaatagaactcatattgtaaaattttatcaagtatcaa |
116 |
Q |
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|||||||||||||| ||||||||||||| ||||||||| || |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
6495651 |
ttattccaccaatcttcttaattgtaaccaatgaaaagcggtcaatgatctgactcatctttgaatagaacccatattgtaaaattttatcaagtatcaa |
6495552 |
T |
|
| Q |
117 |
gccactattctgaaaccaacactctatctagtttactcactgtgacaccatttcgatgtgcttagacaaaatgcctcccaagaagaggtaggtcaataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6495551 |
gccactattctgaaaccaacactctatctagtttactcactgtgacaccatttcgatgtgcttagacaaaatgcctcccaagaagaggtaggtcaataaa |
6495452 |
T |
|
| Q |
217 |
tttcatataagccaagaactgattgaaccactatatataatgttaagctatgttggattccctgattcaaacctcttcgctcatcaaagttagtaactaa |
316 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6495451 |
ttccatataagccaagaactgattgaaccactatatataatgttaagctatgttggattccctaattcaaacctcttcgctcatcaaagttagtaactaa |
6495352 |
T |
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| Q |
317 |
attaaaatctcccatcgta |
335 |
Q |
| |
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||||||||||||||||||| |
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| T |
6495351 |
attaaaatctcccatcgta |
6495333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 31730404 - 31730082
Alignment:
| Q |
17 |
ttattccaccaatcatcttaattgtaacgaatgaaaagtggccaatgatctgactcttctttcaatagaactcatattgtaaaattttatcaagtatcaa |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31730404 |
ttattccaccaatcttcttaattgtaacgaatgaaaagtggtcaatgatctgactcatctttcaatagaatccatattgtaaaattttatcaagtatcaa |
31730305 |
T |
|
| Q |
117 |
gccactattctgaaaccaacactctatctagtttactcactgtgacaccatttcgatgtgcttagacaaaatgcctcccaagaagaggtaggtcaataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
31730304 |
gccactattctgaaaccaacactctatctagtctactcattgtgacaccatttcgatgtgcttagacagaatgcctcccaagaagaggcaggtcaataaa |
31730205 |
T |
|
| Q |
217 |
tttcatataagccaagaactgattgaaccactatatataat-----gttaagctatgttggattccctgattcaaacctcttcgctcatcaaagttagta |
311 |
Q |
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|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31730204 |
ttccatataagccaagaactgattgaaccactatatatgatatgatgttaagctatgttggattccc-gattcaaacctcttcgctcatcaaagttagta |
31730106 |
T |
|
| Q |
312 |
actaaattaaaatctcccatcgta |
335 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
31730105 |
actaaattaaaatctcccatcgta |
31730082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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