View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20252_low_3 (Length: 333)
Name: NF20252_low_3
Description: NF20252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20252_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 19603726 - 19604051
Alignment:
| Q |
1 |
cattttactatatagtttaacaatctataaatgttttcctatataaatattttt-cttgtgtttaaatgataattggatc-agtttataccaacatcgtt |
98 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |||| ||||||||| |||||||| ||||||||||||||||||| |
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| T |
19603726 |
cattttactatatagtttatcaatctagaaatgttttcctatataaatattttttcatgtgcttaaatgatgattggatccagtttataccaacatcgtt |
19603825 |
T |
|
| Q |
99 |
ttcgaaagagtatttgaatggaaagaatgggattgcaaccgtgttgtttggtgatgaggataagacttggcgcttaaacttcaagttcaatgatacaact |
198 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19603826 |
ttcgaaagagtatttgaatggcaagaatgggattgcaaccgtgttgtttggtgatgaggataagacttggcgcttaaacttcaagttcaatgatacaact |
19603925 |
T |
|
| Q |
199 |
aatcgagcactcataacttctggttggggacaaattgttgacgaatataatttcaaagttggtgacacttgtgtatttgagatgactgatagtacaaata |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19603926 |
aatcgagcactcataacttctggttggggacaaattgttgacgagtataatttcaaagttggtgacacttgtgtatttgagatgactgatagtacaaata |
19604025 |
T |
|
| Q |
299 |
ttttctttaaagttcatattcttcga |
324 |
Q |
| |
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|||||||||||||||||||| ||||| |
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| T |
19604026 |
ttttctttaaagttcatattgttcga |
19604051 |
T |
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