View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20253_low_11 (Length: 249)
Name: NF20253_low_11
Description: NF20253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20253_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 40854117 - 40854350
Alignment:
| Q |
1 |
tgttagcctatattggccatcctgcatttcccatggcgttgtctggtaatttaaaaacataaaacgtcctgatattttttgggattattgtgatgccatg |
100 |
Q |
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| T |
40854117 |
tgttagcctatattggccatcctgcatttcccatggcgttgtctggtaatttaaaaacataaaacgtcctgatattttttgggattattgtgatgacatg |
40854216 |
T |
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| Q |
101 |
aggaatcatgtttcttttattgacagtgtaagatattttactaaggttaacttgtgcaactttgattttagtggactcaattcttaggttgtttcaactg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40854217 |
aggaatcatgtttcttttattgacagtgtaagatattttactaaggttaacttgtacaactttgattttagtggactcaattcttaggttgtttcaactg |
40854316 |
T |
|
| Q |
201 |
atatcagcttctagctagtgttatttttgtttat |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40854317 |
atatcagcttctagctagtgttatttttgtttat |
40854350 |
T |
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