View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20253_low_13 (Length: 211)
Name: NF20253_low_13
Description: NF20253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20253_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 41334833 - 41334655
Alignment:
| Q |
18 |
tctataagggggtacgccaggttcttcactaaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaat |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41334833 |
tctataagggggtaggccaggttcttcactaaatctcatctctttcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaat |
41334734 |
T |
|
| Q |
118 |
ggaaaactccgttgtggtgggtgacaatgcggcactaatgatgagagaagtgaacctaatatggtgtcggatagttcat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41334733 |
ggaaaactccgttgtggtgggtgacaatgcggcactaatgatgagagaagtgaacctaatatggtgtcggatagttcat |
41334655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 196
Target Start/End: Complemental strand, 1482626 - 1482470
Alignment:
| Q |
40 |
tcttcactaaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaatggaaaactccgttgtggtgggt |
139 |
Q |
| |
|
||||| |||||| ||| ||||||| |||||||||||| |||| |||||||||||||||||||||| || |||| || ||| | || | ||||||||| | |
|
|
| T |
1482626 |
tcttcgctaaattccatttcattccaccatgattcttttcctgatggccaccatggtggaggaatgtctctttctaaaggatatcttctttgtggtggat |
1482527 |
T |
|
| Q |
140 |
gacaatgcggcactaatgatgagagaagtgaacctaatatggtgtcggatagttcat |
196 |
Q |
| |
|
||||| ||| | ||||||| | ||||||||||||| | ||||| | |||||||| |
|
|
| T |
1482526 |
cgcaatgttgcattcatgatgataaaagtgaacctaatgttgtgtcaggtagttcat |
1482470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 177
Target Start/End: Original strand, 4153893 - 4154029
Alignment:
| Q |
40 |
tcttcactaaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaatggaaaactccgttgtggtgggt |
139 |
Q |
| |
|
|||||||||||| ||| ||||| | ||| ||||||| |||| |||| | |||||||||||||||||| |||| || ||| | |||| ||||||||| | |
|
|
| T |
4153893 |
tcttcactaaattccatttcatttcatcataattcttttcctgatggctatcatggtggaggaatgcctatttctaa-ggatatctcctttgtggtggat |
4153991 |
T |
|
| Q |
140 |
gacaatgcggcactaatgatgagagaagtgaacctaat |
177 |
Q |
| |
|
|||||| ||| | ||||||| | ||||||||||||| |
|
|
| T |
4153992 |
cacaatgttgcattcatgatgataaaagtgaacctaat |
4154029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 1482826 - 1482892
Alignment:
| Q |
47 |
taaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttc |
113 |
Q |
| |
|
||||| |||| ||||||| |||||||||||| | ||||||||||||||||||||||||| |||| |
|
|
| T |
1482826 |
taaatttcatttcattccaccatgattctttttccaatggccaccatggtggaggaatgcctctttc |
1482892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 20920212 - 20920034
Alignment:
| Q |
18 |
tctataagggggtacgccaggttcttcactaaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaat |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20920212 |
tctataagggggtaggccaggttcttcactaaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaat |
20920113 |
T |
|
| Q |
118 |
ggaaaactccgttgtggtgggtgacaatgcggcactaatgatgagagaagtgaacctaatatggtgtcggatagttcat |
196 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20920112 |
ggaaatctccgttgtggtgggtgacaatgcggcactaatgatgagagaagtgaacctaatatggtgtcggttagttcat |
20920034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 20901749 - 20901571
Alignment:
| Q |
18 |
tctataagggggtacgccaggttcttcactaaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaat |
117 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20901749 |
tctataagggggaaggccaggttcttcactaaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaat |
20901650 |
T |
|
| Q |
118 |
ggaaaactccgttgtggtgggtgacaatgcggcactaatgatgagagaagtgaacctaatatggtgtcggatagttcat |
196 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20901649 |
ggaaatctccgttgtggtgggtgacaatgcggcactaatgatgagagaagtgaacctaatatggtgtcgggtagttcat |
20901571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 2588298 - 2588227
Alignment:
| Q |
45 |
actaaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaa |
116 |
Q |
| |
|
|||||||| ||| || ||| ||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2588298 |
actaaatcccatttcgatccaccatgattcgttccctgttggccaccatggtggaggaatgccgctttccaa |
2588227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University