View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20253_low_2 (Length: 391)

Name: NF20253_low_2
Description: NF20253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20253_low_2
NF20253_low_2
[»] chr7 (2 HSPs)
chr7 (16-387)||(38635285-38635653)
chr7 (43-351)||(38633574-38633881)
[»] chr1 (18 HSPs)
chr1 (93-357)||(19266704-19266962)
chr1 (184-357)||(19267265-19267439)
chr1 (43-150)||(35249914-35250021)
chr1 (59-136)||(45527121-45527198)
chr1 (298-345)||(35203181-35203228)
chr1 (298-345)||(45526202-45526249)
chr1 (48-150)||(35265654-35265756)
chr1 (301-345)||(8640315-8640359)
chr1 (298-345)||(35206425-35206472)
chr1 (298-345)||(35216972-35217019)
chr1 (298-345)||(35476995-35477042)
chr1 (47-141)||(35477271-35477365)
chr1 (295-345)||(45534406-45534456)
chr1 (295-344)||(35272922-35272971)
chr1 (298-345)||(35192841-35192888)
chr1 (298-345)||(35222789-35222836)
chr1 (301-344)||(35265360-35265403)
chr1 (301-346)||(35295215-35295260)
[»] chr2 (1 HSPs)
chr2 (301-351)||(33137662-33137712)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 38635653 - 38635285
Alignment:
Q  16 gaatgacatcgttagaggtactaccaaaagagtgcattgccatcatactgtctcgtatgactccagttgatgcaggcagactctccgtcgtttctaagac 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38635653 gaatgacatcgttagaggtactaccgaaagagtgcattgccatcatactgtctcgtatgactccagttaatgcaggcagactctccgtcgtttctaagac 38635554  T
Q  116 attcagttctgccgccgattcagacgaagtctggactcgttttctcctcctttccagcccggaattcctggcctctatcatctcacacagtcctttcctt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  38635553 attcagttctgccgccgattcagacgaagtctggactcgttttctcctcctttccagctcggaattcctggcctctatcatct--cacagtcctttcctt 38635456  T
Q  216 accaaaaaggctctctatcttgccctattctcatgcccatcaccctatcatcatcgaccatggtacaaagggcttttatttagatagaaagagtggaaaa 315  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38635455 accaaaaaggctctctatcttgcccta-tctcatgcccatcaccctatcatcatcgaccatggtacaaagggcttttatttagatagaaagagtggaaaa 38635357  T
Q  316 aagtgttacattcttgctgctaaatctctcatcattccttatggtgctcttgttgctcctaatactaatatg 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38635356 aagtgttacattcttgctgctaaatctctcatcattccttatggtgctcttgttgctcctaatactaatatg 38635285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 43 - 351
Target Start/End: Complemental strand, 38633881 - 38633574
Alignment:
Q  43 aagagtgcattgccatcatactgtctcgtatgactccagttgatgcaggcagactctccgtcgtttctaagacattcagttctgccgccgattcagacga 142  Q
    |||||||||||||||| ||||||||||||| |||||| ||||| || || ||||||||| |||||| ||||||||||  |||||||||| |||  |||||    
T  38633881 aagagtgcattgccattatactgtctcgtacgactccggttgacgcgggaagactctccctcgtttgtaagacattccattctgccgccaattttgacga 38633782  T
Q  143 agtctggactcgttttctcctcctttccagcccggaattcctggcctctatcatctcacacagtcctttccttaccaaaaaggctctctatcttgcccta 242  Q
     || ||||  |||||||||||| |||||  |||  ||||| |||| ||||| || ||||||| || ||| ||||||||||||||  ||||||||||||||    
T  38633781 tgtatggaaccgttttctcctcttttccgtcccccaattcatggcatctattatttcacacaatcttttgcttaccaaaaaggccatctatcttgcccta 38633682  T
Q  243 ttctcatgcccatcaccctatcatcatcgaccatggtacaaagggcttttatttagatagaaagagtggaaaaaagtgttacattcttgctgctaaatct 342  Q
     ||| ||  |  |  ||||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  38633681 -tctgatcgcggtagccctatcatcatcaaccatggtaaaattggcttttatttagatagaaagagtggaaaaaagtgttgcatccttgctgctaaatct 38633583  T
Q  343 ctcatcatt 351  Q
    |||| ||||    
T  38633582 ctcagcatt 38633574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 93 - 357
Target Start/End: Complemental strand, 19266962 - 19266704
Alignment:
Q  93 agactctccgtcgtttctaagacattcagttctgccgccgattcagacgaagtctggactcgttttctcctcctttccagcccggaattcctggcctcta 192  Q
    ||||||||| | ||||||||||||||| ||||| |||| ||||| |||   ||||||| || ||||||||||||||||  | |  | ||| |||||||||    
T  19266962 agactctccattgtttctaagacattccgttctaccgctgattctgacattgtctggaatcattttctcctcctttccgacactcagttcatggcctcta 19266863  T
Q  193 tcatctcacacagtcctttccttaccaaaaaggctctctatcttgccctattctcatgcccatcaccctatcatcatcgaccatggtacaaagggctttt 292  Q
    ||   ||||||| || ||||||||||||||| ||| ||||||||||| ||| || ||  ||||  | ||||||||||||||||||||| ||| |||||||    
T  19266862 tc---tcacacaatcgtttccttaccaaaaaagctatctatcttgccttat-cttatatccatttctctatcatcatcgaccatggtaaaaatggctttt 19266767  T
Q  293 atttagatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctcatcattccttat 357  Q
    ||||  |||||||||||||| |||||||||||||||| |  |||| |||||||| ||||||||||    
T  19266766 atttgaatagaaagagtgga-aaaagtgttacattctcg-ggctatatctctcaccattccttat 19266704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 184 - 357
Target Start/End: Original strand, 19267265 - 19267439
Alignment:
Q  184 tggcctctatcatctcacacagtcctttccttaccaaaaaggctctctatcttgccctat-tctcatgcccatcaccctatcatcatcgaccatggtaca 282  Q
    ||||||||||||||||||||| ||||||||| |||| ||||| | ||||||||||| ||| ||| ||  |||||||||||||||||| |||||  | | |    
T  19267265 tggcctctatcatctcacacaatcctttcctaaccataaaggatatctatcttgccttatctctgattaccatcaccctatcatcatggaccaaagaaaa 19267364  T
Q  283 aagggcttttatttagatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctcatcattccttat 357  Q
    |||| | |||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  19267365 aaggtcatttatttaaatagaaataatggaaaaaagtgttacattcttgctgctagatctctcactattccttat 19267439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 35250021 - 35249914
Alignment:
Q  43 aagagtgcattgccatcatactgtctcgtatgactccagttgatgcaggcagactctccgtcgtttctaagacattcagttctgccgccgattcagacga 142  Q
    ||||||||||||||  |||||| ||||| | |||||| ||||| || | |||||||||| |||||||||||||| || |||||||||| ||||| ||||     
T  35250021 aagagtgcattgccgccatactctctcgaacgactcccgttgacgccgtcagactctccctcgtttctaagacactccgttctgccgctgattccgacgc 35249922  T
Q  143 agtctgga 150  Q
     |||||||    
T  35249921 cgtctgga 35249914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 45527198 - 45527121
Alignment:
Q  59 catactgtctcgtatgactccagttgatgcaggcagactctccgtcgtttctaagacattcagttctgccgccgattc 136  Q
    ||||||||| |||| |||||| ||||| || |||||||||||||||||||| ||||| |||  |||||||||||||||    
T  45527198 catactgtcacgtacgactcctgttgacgccggcagactctccgtcgtttcgaagactttcctttctgccgccgattc 45527121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 35203228 - 35203181
Alignment:
Q  298 gatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 345  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  35203228 gatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 35203181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 45526249 - 45526202
Alignment:
Q  298 gatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 345  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  45526249 gatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 45526202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 35265756 - 35265654
Alignment:
Q  48 tgcattgccatcatactgtctcgtatgactccagttgatgcaggcagactctccgtcgtttctaagacattcagttctgccgccgattcagacgaagtct 147  Q
    |||||||||| |||| | |||||||  ||||||||||| || |||||||||||||||||||| ||||| ||| | || ||| ||||||| ||||  ||||    
T  35265756 tgcattgccaccatagtctctcgtacaactccagttgacgccggcagactctccgtcgtttcaaagactttccgatcagcctccgattccgacgctgtct 35265657  T
Q  148 gga 150  Q
    |||    
T  35265656 gga 35265654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 8640359 - 8640315
Alignment:
Q  301 agaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 345  Q
    |||||||||||||||||||||||||| |||||||||| |||||||    
T  8640359 agaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 8640315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 35206472 - 35206425
Alignment:
Q  298 gatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 345  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  35206472 gatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35206425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 35217019 - 35216972
Alignment:
Q  298 gatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 345  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  35217019 gatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35216972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 35477042 - 35476995
Alignment:
Q  298 gatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 345  Q
    |||||||||||||| |||||||||||||| |||||||||| |||||||    
T  35477042 gatagaaagagtgggaaaaagtgttacatgcttgctgctagatctctc 35476995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 35477365 - 35477271
Alignment:
Q  47 gtgcattgccatcatactgtctcgtatgactccagttgatgcaggcagactctccgtcgtttctaagacattcagttctgccgccgattcagacg 141  Q
    ||||||||||  |||||| ||| |||  ||||||| ||| || |||||| ||||||||||||| ||||||||| ||| |||||| ||||| ||||    
T  35477365 gtgcattgccgccatactatcttgtaccactccagctgacgccggcagattctccgtcgtttccaagacattccgttgtgccgctgattcggacg 35477271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 345
Target Start/End: Complemental strand, 45534456 - 45534406
Alignment:
Q  295 ttagatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 345  Q
    ||||||||||| ||||| |||||||||||||| |||||||||| |||||||    
T  45534456 ttagatagaaatagtgggaaaaagtgttacatgcttgctgctagatctctc 45534406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 344
Target Start/End: Complemental strand, 35272971 - 35272922
Alignment:
Q  295 ttagatagaaagagtggaaaaaagtgttacattcttgctgctaaatctct 344  Q
    ||||| |||||||||||||||||||||||||| ||| |||||| ||||||    
T  35272971 ttagagagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35272922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 35192888 - 35192841
Alignment:
Q  298 gatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 345  Q
    ||||| |||||||||||||||||||| || |||||||||| |||||||    
T  35192888 gataggaagagtggaaaaaagtgttatatgcttgctgctagatctctc 35192841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 35222836 - 35222789
Alignment:
Q  298 gatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctc 345  Q
    ||||||||||||||||||||||||  ||| |||||||||| |||||||    
T  35222836 gatagaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctc 35222789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 344
Target Start/End: Complemental strand, 35265403 - 35265360
Alignment:
Q  301 agaaagagtggaaaaaagtgttacattcttgctgctaaatctct 344  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||    
T  35265403 agaaagagtggaaaaaagtgttacatgctttctgctagatctct 35265360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 35295215 - 35295260
Alignment:
Q  301 agaaagagtggaaaaaagtgttacattcttgctgctaaatctctca 346  Q
    ||||||||||| ||||||||||| || |||||||||| ||||||||    
T  35295215 agaaagagtgggaaaaagtgttatatgcttgctgctagatctctca 35295260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 351
Target Start/End: Original strand, 33137662 - 33137712
Alignment:
Q  301 agaaagagtggaaaaaagtgttacattcttgctgctaaatctctcatcatt 351  Q
    |||||||||||| ||||||||||||| |||||||||| |||||||| ||||    
T  33137662 agaaagagtggacaaaagtgttacatgcttgctgctagatctctcaccatt 33137712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University