View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20253_low_6 (Length: 289)
Name: NF20253_low_6
Description: NF20253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20253_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 2066702 - 2066881
Alignment:
| Q |
11 |
caaaggcaaacaaatagaaagagaaaatgttgacgaaggaatgaatatgcatgcatgcatgcatatgtttaaaaagctttccttgttttgcgtagcatcg |
110 |
Q |
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| T |
2066702 |
caaaggcaaacaaatagaaagagaaaaagttgacgaaggaatgaatatgcatgcatgcatgcatatgtttaaaaagctttccttgttttgcgtagcatcg |
2066801 |
T |
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| Q |
111 |
aaataaaaaagaatgaaacattttgggtagatttatttttgttcaaattggatagaaacatgttggatgggatctgcttg |
190 |
Q |
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| T |
2066802 |
aaataaaaaagaatgaaacatgttgggtagatttatttttgttcaaattggatagaaacatgttggatgggatctgcttg |
2066881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 2066943 - 2066980
Alignment:
| Q |
252 |
gaaaccatacaagaagatactatttgactagtttcagc |
289 |
Q |
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| T |
2066943 |
gaaaccatacaagaagatactatttgactagtttcagc |
2066980 |
T |
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