View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_high_10 (Length: 416)
Name: NF20254_high_10
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Original strand, 38520126 - 38520518
Alignment:
| Q |
11 |
cacagacaacaaatacgccttcatctgaagtgttgtcaatgctgcatagtctttgataaacactgctcaagtctagtaactaatactccctccatt---t |
107 |
Q |
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| T |
38520126 |
cacaaacaacaaatacgccttcatctgaagtgtggtcaacgctgcatagtctttgataaacactgctcaagtctagtaactaatactccctccattattt |
38520225 |
T |
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| Q |
108 |
ctttacaacttataagggtcacattcagaattttgttcaatctcatatgacttctaacttgagaaatactaagacaaatatttattaactttttcaacaa |
207 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38520226 |
ctttacaacttataagtgtcacattcagaattttgttcaatctcatatgacttctaacttgagaaatactaagacaaatattcattaactttttcaacaa |
38520325 |
T |
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| Q |
208 |
tattcgcatttgattaatagatcatccaactggtttccatgaacagacttatataagcatataaaattgcaattcataagaacatgttacaaaattgaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38520326 |
tattcgcatttgattaatagatcatccaactggtttccatgaacagccttatataagcatatcaaattgcaattcataagaacatgttacaaaattgaac |
38520425 |
T |
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| Q |
308 |
tagtttgattttcacagtggattttactgtatagtaatacaaaattggtacaaagaaaaagaaagagcaaaagtggcaaaccgtagtgcctgc |
400 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38520426 |
tagtttgattttcacaatggattttactgtatagtaatacaaaattggtgcaaagaaaaagaaagagcaaaagtggcaaaccgtagtgcctgc |
38520518 |
T |
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