View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_high_11 (Length: 391)
Name: NF20254_high_11
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 11916686 - 11917055
Alignment:
| Q |
18 |
tgtgtggtggaatttatatcaaaaactttatcatcaatgactgaaccgtacttatttgttacatttgatgttatttttgctttt--tacaaagataagag |
115 |
Q |
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| T |
11916686 |
tgtgtggtggaatttatatcaaaaactttatcatcaatgactgaaccgtacttatttgttacatttgatgttatttttgcttttattacaaagataagag |
11916785 |
T |
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| Q |
116 |
taccaaattattttataagcaagctttattagtggttcatattcttatacgagccatctagataagtggaattaaaaatagtccacgtatatgaatttgg |
215 |
Q |
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| T |
11916786 |
taccaaattattttataagcaagctttattagtggttcatattcttatacgagccatctagataagtggaattaaaaatagtccacgtatatgaatctgg |
11916885 |
T |
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| Q |
216 |
aacaagacaatttttaaggtccacagcatgatgttgttgagaaaatcattataaaattgatattctcacaacatacataattggtcacttatagttcact |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
11916886 |
aacaagacaatttttaaggtccacagcatgatgttgttgagaaaatcattataaaattg--attctcaca----acataattggtcacttatagttcact |
11916979 |
T |
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| Q |
316 |
-------------tgtgcctaattcctcacattgtgcaacaacaacaaaatgttgcttcctattgttgtgttgctt |
378 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11916980 |
tgtatttttcttctgtgcctaatttctcacattgtgcaacagcaacaaaatgttgcttcctattgttgtgttgctt |
11917055 |
T |
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