View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_high_17 (Length: 329)
Name: NF20254_high_17
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 126 - 302
Target Start/End: Complemental strand, 28342810 - 28342634
Alignment:
| Q |
126 |
ggtgttggtctgtaagagattacactgttgtgttgaaccgtgagagattgcaattatgtattttggttcacaagagaatacacattatagaatgagttat |
225 |
Q |
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| T |
28342810 |
ggtgttggtcggtaagagattacactgttgtgttgatccgtgagagattgcaattatgtattttggttcataagataatacacactatagaaggagttat |
28342711 |
T |
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| Q |
226 |
cctacaaccctctgcgttttcctcgctcttcannnnnnnnaccatcttcttggtaaattatcatcttcttgacttaa |
302 |
Q |
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| T |
28342710 |
cctacaaccctctgcgttttcttcgctcttcattttttttaccatcttcttggtaaattatcatcttcttgacttaa |
28342634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 28342973 - 28342815
Alignment:
| Q |
1 |
ctactttcatgaatgatttggataaacatatgaaccacgtttggattatgatttttattatatatgctggattaatatgtaaattgttgcattagtgtaa |
100 |
Q |
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| T |
28342973 |
ctacttttatgtatgatttggataaacatatgaaccacgtttggattatgatttttattatatatgctggattaatatgtaaattgttgcattagcgtaa |
28342874 |
T |
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| Q |
101 |
atggagtat----------tcaattttatagtaaaggtgttggtctgtaagagattaca |
149 |
Q |
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| T |
28342873 |
atggagtataatacacttatcaattttatagtaaaggtgttggtctgtaagagattaca |
28342815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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