View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_high_20 (Length: 304)
Name: NF20254_high_20
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 290
Target Start/End: Complemental strand, 45308094 - 45307822
Alignment:
| Q |
18 |
agctgtccgttctgaaatgttgtcccttggcttggagtgtgattgcttccatcatgttttgtcgttgcaagatgctagcagctgcagctcttgggaaata |
117 |
Q |
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| T |
45308094 |
agctgtccgttctgaaatgttgtcccttggcttggagtgtgattgcttccatcatgttttgtcgttgcaagatgctagcagctgcagctcttgggaaata |
45307995 |
T |
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| Q |
118 |
cagaaattctcaattttagactaagaccagtgtcacctgatcgattttttatgaaaacaatgcaattatgcgtgtacctgtggacatactttgtataatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307994 |
cagaaattctcaattttagactaagaccagtgtcacctgatcgattttttatgaaaacaatgcaattatgcgtgtacctgtggacatactttgtataatt |
45307895 |
T |
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| Q |
218 |
ggcttaacttttataaacgaatctcaactctaatattatcaaggaatcaaaagctgtttttcttaattccccc |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307894 |
ggcttaacttttataaacgaatctcaactctaatattatcaaggaatcaaaagctgtttttcttaattccccc |
45307822 |
T |
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