View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_high_26 (Length: 251)
Name: NF20254_high_26
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 24014527 - 24014294
Alignment:
| Q |
8 |
attacttatttaaagatgatattctatcaaatagacttttaaataggtttgtatgtcatatcaaattttttcaatgtcacactcagacctaaaaaataag |
107 |
Q |
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| T |
24014527 |
attacttatttaaagatgatatcctatcaaatagacttttaaatatgtttgcatgtcatatcaaatttttacaatgttacactcagacctaaaaaataag |
24014428 |
T |
|
| Q |
108 |
catacgacagattacagacctgtaatcgaccttaaaacttttgnnnnnnntaatcaaccgattcaatctgaccacactctaaaacacacagcagatcttc |
207 |
Q |
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|||||||| || ||||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24014427 |
catacgacggagtacagacctaggatcgaccttaaaatttttgaaaaaaataatcaatcgattcaatctgaccacactctaaaacacacagcagatcttc |
24014328 |
T |
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| Q |
208 |
gaaaaataattattattagttaaatagagaataa |
241 |
Q |
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| |||||||||||||||||||||||||||||||| |
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| T |
24014327 |
ggaaaataattattattagttaaatagagaataa |
24014294 |
T |
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