View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_high_31 (Length: 235)
Name: NF20254_high_31
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 1338039 - 1337811
Alignment:
| Q |
1 |
tatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaaatgttatcaaccttaggatgagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1338039 |
tatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaaatgttatcaaccttaggatgagc |
1337940 |
T |
|
| Q |
101 |
atgctagcattttttcaattaaactcatccgaccatgttctttgtttggacttgttgtataagtggaagtacttatttcgatcgttttctttttcattta |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1337939 |
atgctagcattttttcaattaaactcatctgaccatgttctttgtttggacttgttatataagtggaagtacttatttcgatcgttttctttttcattta |
1337840 |
T |
|
| Q |
201 |
tgattatgcattttctcaatcctatgtta |
229 |
Q |
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|||||||||||||||||||||||| |||| |
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| T |
1337839 |
tgattatgcattttctcaatcctaagtta |
1337811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31939852 - 31939631
Alignment:
| Q |
1 |
tatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaaatgttatcaaccttaggatgagc |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | || ||||| | | |
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| T |
31939852 |
tatattttgtaaaactaatgccactaatgttatcctcccattgcaaaacctctttaaaacaatgttgtatataagaaatgttattgaactcaggattatc |
31939753 |
T |
|
| Q |
101 |
atgctagcattttttcaattaaactcatccgaccatgttctttgtttggacttgttgtataagtggaagtacttatttcgatcgttttctttttcattta |
200 |
Q |
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| T |
31939752 |
atgttagcattttttcaattaaactcatctgaccatgttctttgtttggacttgttgtgcaagtggcagtccttatttcaattgttttctttttcattta |
31939653 |
T |
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| Q |
201 |
tgattatgcattttctcaatcc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
31939652 |
tgattatgcattttctcaatcc |
31939631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 13536088 - 13536017
Alignment:
| Q |
4 |
attttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaa |
77 |
Q |
| |
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||||||||||||||||||||||||||| || |||| |||||||| || |||||| ||||||||||||||||| |
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| T |
13536088 |
attttgtaaaactaatgccacttatgtaattgtccctttgcaaaaactgtttaaa--aatgttgtatttgagaa |
13536017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 9390205 - 9390050
Alignment:
| Q |
1 |
tatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgttgtatttgagaaatgttatcaaccttaggatgagc |
100 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||| | | |
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| T |
9390205 |
tatattttgtaaaactaatgccacttatgctatcctcccattgcaaaacctctttaaaacaatgttgtatatgaaaaatgttattgacctcaggattatc |
9390106 |
T |
|
| Q |
101 |
atgctagcattttttcaattaaactcatccgaccatgttctttgtttggacttgtt |
156 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9390105 |
atgttagcattttttcaattaaactcatctgaccatgttctttgtttggacttgtt |
9390050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 9390041 - 9389997
Alignment:
| Q |
185 |
ttttctttttcatttatgattatgcattttctcaatcctatgtta |
229 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||||| |||||| |
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| T |
9390041 |
ttttctttttcatttctgattctgcattttctcaatcccatgtta |
9389997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5639927 - 5639862
Alignment:
| Q |
1 |
tatattttgtaaaactaatgccacttatgttatcctcccattgcaaaacctctttaaaacaatgtt |
66 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||||| ||||||| |
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| T |
5639927 |
tatattttgtaaatccaatgccacttatgctatcctcaaattgcaaaacctctttaaagcaatgtt |
5639862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 5639861 - 5639796
Alignment:
| Q |
88 |
ccttaggatgagcatgctagcattttttcaattaaactcatccgaccatgttctttgtttggactt |
153 |
Q |
| |
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||||||||| | |||| ||||||||||||||||||||||||| | |||||||| ||| ||| |||| |
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| T |
5639861 |
ccttaggattatcatgttagcattttttcaattaaactcatctggccatgttccttgcttgaactt |
5639796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 5639783 - 5639700
Alignment:
| Q |
135 |
atgttctttgtttggacttgttgtataagtggaagtacttatt-tcgatcgttttctttttcatttatgattatgcattttctca |
218 |
Q |
| |
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|||||| |||| |||||||||||| ||||||| |||| ||||| ||||| |||||||||||| || |||||||||||||||| |
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| T |
5639783 |
atgttcattgtctggacttgttgtgtaagtggcagta-ttattctcgattaatttctttttcatgcatcattatgcattttctca |
5639700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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