View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_high_5 (Length: 554)
Name: NF20254_high_5
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 7175416 - 7174859
Alignment:
| Q |
1 |
aggtcatcattcccaagtataatcaaatggannnnnnnnnnnnaataaatataagcaccccaaacatatatgatcagaattgaacatttaatgctacaca |
100 |
Q |
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| T |
7175416 |
aggtcatcatccccaagtataatcaaatggacccccaccccccaataaatataagcaccccaaaaatatatgatcagaattgaacatttaatgctacaca |
7175317 |
T |
|
| Q |
101 |
aattactaacatacactgtaccagagcatttgccttgccaaactgcatcatttcttttctcctctctcattttctcaatgacggatgtccccaaccccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7175316 |
aattactaacatacactgtaccagagcatttgccttgccaaactgcatcatttcttttctcctctctcattttctcaatgacggatgtccccaaccccat |
7175217 |
T |
|
| Q |
201 |
gcttggcaactctgtcttccaaccttctcttttagatttaccatcagactgcaacttatccacaacctgctcaatgaccagatcaataacaactttagtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7175216 |
gcttggcaactctgtcttccaaccttctcttttagatttaccatcagactgcaacttatccacaacctgctcaatgaccagatcaataacagctttagtt |
7175117 |
T |
|
| Q |
301 |
accatccacaatatatgacctaaagattacatttccaatccaaatatttgtctaccacttaagcaacaataacaatgccacaaaaatgaaccctgcaatc |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7175116 |
accatccacaatatatgacctaaagattacatttccaatccaattattcgtctaccacttaaggaacaataacaatgccacaaaaatgaaccctgcaatc |
7175017 |
T |
|
| Q |
401 |
ttaactcaactaaccgaactggagtacctagtatcgtcgcatgcccg----------------tatccatgcttcagagtctaccacttaaggaacaata |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7175016 |
ttaactcaactaaccgaactggagtacctagtatcgtcgcatgcccgtatcaggtaggacaagtatccatgcttcagagtctaccacttaaggaacaata |
7174917 |
T |
|
| Q |
485 |
aaaatgccataaaatgaaccctaaaatcttaactcaactaacccacctggtttcttca |
542 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
7174916 |
aaaatgccataaaatgaaaactacaatcttaactcaactaacccacctggtttcttca |
7174859 |
T |
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