View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_1 (Length: 895)
Name: NF20254_low_1
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 525 - 877
Target Start/End: Complemental strand, 42934135 - 42933786
Alignment:
| Q |
525 |
ataattatatatagaatcaaagtggttaattcaaccaaagaaacacaaatttacaaaacgaaattgggaaaacataaaataaaatagatcaccaactaaa |
624 |
Q |
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| T |
42934135 |
ataattatatatagaatcaatgtgattaattcaaccaaagaaactcaaatttacaaaacgaaattgggaaaacataaaataaaatagatcaccaactaaa |
42934036 |
T |
|
| Q |
625 |
taacaaacctggtgccccggatcaatactacttctgctgttggtatccaaagaattcatttcattgattaggtcaaaaacgggtttctgatcatttcctt |
724 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934035 |
taacaaacctggtgccccggatcaatactact---gctgttggtatccaaagaattcatttcattgattaggtcaaaaacgggtttctgatcatttcctt |
42933939 |
T |
|
| Q |
725 |
gatcatcaccaacacgttcctgatcttcttcaccgtcttcttcgttattgttaccctccaaagttaaaggagacaacggtatattaatattgtttgccca |
824 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42933938 |
gatcatcaccaacacgttcctgatcttcttcaccatcttcttccttattgttaccctccaaagttaaaggagacaacggtatattaatattgtttgccca |
42933839 |
T |
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| Q |
825 |
tgaattaagatcctcttgtaaaggaacataattagggttaataccgacatcat |
877 |
Q |
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| T |
42933838 |
tgaattaagatcctcttgtaaaggaacataattagggttaatacagacatcat |
42933786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 191 - 527
Target Start/End: Complemental strand, 42934509 - 42934157
Alignment:
| Q |
191 |
aattaaatgtaaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgcta |
290 |
Q |
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| T |
42934509 |
aattaaatgtaaacttaagaagtagtactatcatggaattaatgcattttatgtcattcaatactctctttttcgtccaaggtgtgagatggatctgcta |
42934410 |
T |
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| Q |
291 |
attagttccaccataaaaactttcta----------------cttctattagtggatttcattcagcacatgttatatccaaacatacataatcaagtac |
374 |
Q |
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| T |
42934409 |
attagttccaccataaaaactttctagttctaaaaggtataacttctattagttgatttcattcagcacatgttatatccaaacatacataatcaagtac |
42934310 |
T |
|
| Q |
375 |
taaaaccataacatcataatcatacatgaaatgccccaaattataatgtgttctaactcctgtaagccaaaaaatctcatgaaacctagattaaaatgaa |
474 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934309 |
taaaaccataacatcataatcatacatgaaatgccccaaattataatgtgttctaactcctgtaagccaaaaaatctcatgaaacctagattaaaatgaa |
42934210 |
T |
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| Q |
475 |
gcaagcaatgatttgtaacaaacaaacaaatcaacaacaaacttggcttcata |
527 |
Q |
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| T |
42934209 |
gcaagaaatgatttgtaacaaacaaacaaatcaacaacaaacttggcttcata |
42934157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42934729 - 42934524
Alignment:
| Q |
1 |
aaattaatggtaaaaaatctatcttaggatatttgcatttttaattgaagggttggttaaatctgtgcttttgaggggatattagcagaggtacagaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934729 |
aaattaatggtaaaaaatctatcttaggatatttgcatttttaattgaagggttggttaaatctgtgcttttgaggggatattagcagaggtacagaatc |
42934630 |
T |
|
| Q |
101 |
ctaaaactagagttgtgattggttttatttgtggatatggacaattagagtaattatgttagattcaattatttgcatgacataaaagacaattaaatgt |
200 |
Q |
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| T |
42934629 |
ctaaaactagagttgtgattggttttatttgtggatatggacaattagagtaattatgttagattccattatttgcatgacataaaagacaattaaatgt |
42934530 |
T |
|
| Q |
201 |
aaactt |
206 |
Q |
| |
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|||||| |
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| T |
42934529 |
aaactt |
42934524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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