View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_13 (Length: 374)
Name: NF20254_low_13
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 5663377 - 5663024
Alignment:
| Q |
1 |
acatgattctcataagcagtttatagtaacatgttagcaatatcagcatagaagaaaactattataacaacagtagtataataacaggaggaagatgaag |
100 |
Q |
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| T |
5663377 |
acatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacagaa---agatgaag |
5663281 |
T |
|
| Q |
101 |
aagttataacccaaggcagcagaacataactactggctcgtgagtaccaaat-tgacaggaaatggaggagaacgtgaagctaatgt--ctttaactact |
197 |
Q |
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| T |
5663280 |
aagttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttct |
5663181 |
T |
|
| Q |
198 |
tgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
5663180 |
tgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccataaacaatgaattcaatcttgctaatacaattacctgg |
5663081 |
T |
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| Q |
298 |
atgcaattgtattgaataatcattcaaccgtgttctttcgttttattgagcacggat |
354 |
Q |
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| T |
5663080 |
atgcacttgtatagaataatcattcaaccgtgtttttccgttttattgaacacggat |
5663024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 111 - 355
Target Start/End: Complemental strand, 52131504 - 52131263
Alignment:
| Q |
111 |
ccaaggcagcagaacataactactggctcgtgagtaccaaattgacaggaaatggaggagaacgtgaagcta-atg-tctttaactacttgtgagaagcg |
208 |
Q |
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| T |
52131504 |
ccaaggcagcagaacataact----tctcgtgagtaccaaattgacaggaaatggaggataacgtgacgctacatgttctttgacttcttgtgagaagcg |
52131409 |
T |
|
| Q |
209 |
accatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgcaattgta |
308 |
Q |
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||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
52131408 |
accatggtcttaccgatgacagaagcttcgaaatcggattgagatacaccgtcaataataaattcaatcttgctaatacaattacctggatgcacttgta |
52131309 |
T |
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| Q |
309 |
ttgaataatcattcaaccgtgttctttcgttttattgagcacggatg |
355 |
Q |
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| T |
52131308 |
ttgaataatcattcaaccgtgttc-ttcgttttactgaacacggatg |
52131263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 199 - 355
Target Start/End: Original strand, 11649155 - 11649311
Alignment:
| Q |
199 |
gtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgga |
298 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11649155 |
gtgagaagcgaccatggtcttaccgatgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctgga |
11649254 |
T |
|
| Q |
299 |
tgcaattgtattgaataatcattcaaccgtgttctttcgttttattgagcacggatg |
355 |
Q |
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|||| ||||||||||||||||||||||||||||||| | ||||| ||| |||||||| |
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| T |
11649255 |
tgcacttgtattgaataatcattcaaccgtgttcttcctttttagtgaacacggatg |
11649311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 144 - 334
Target Start/End: Complemental strand, 22007884 - 22007688
Alignment:
| Q |
144 |
gtaccaaattgacaggaaatggaggagaa----cgtgaagcta-atgt-ctttaactacttgtgagaagcgaccatggtcttaccggtgacagaagcttc |
237 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||| |||||||||||||||| || ||||||||| || |
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| T |
22007884 |
gtaccaaattgacaggaaatggaggagaatcaacgtgaagctacatgttctttaacttcttgtgaaaagcgaccatggtcttgacgatgacagaagtttt |
22007785 |
T |
|
| Q |
238 |
gaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgcaattgtattgaataatcattcaaccgtgttctt |
334 |
Q |
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||||||| |||||||||||||| |||||||||||||| |||| ||||||| ||| ||||||||| ||||||||||||||||||||| |||||||| |
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| T |
22007784 |
gaagtcgaagcgagatacaccgccaacaatgaattcagtcttcgtaatacacttatctggatgcacctgtattgaataatcattcaacagtgttctt |
22007688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 11649126 - 11649159
Alignment:
| Q |
111 |
ccaaggcagcagaacataactactggctcgtgag |
144 |
Q |
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| T |
11649126 |
ccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 14231304 - 14231223
Alignment:
| Q |
251 |
gatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgcaattgtattgaataatcattcaaccgtgttctt |
334 |
Q |
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||||||||| ||||||| ||| | |||| |||||| |||| ||||||||| |||||||||| |||||||||||||||||| |
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| T |
14231304 |
gatacaccgccaacaataaatctagtcttcctaatattattatctggatgcacctgtattgaat--tcattcaaccgtgttctt |
14231223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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