View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_14 (Length: 363)
Name: NF20254_low_14
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 40948010 - 40947678
Alignment:
| Q |
18 |
cttcttcccaacatcaaatttcgcagttgcccatggggctgtgcctacatttctttttgagtctgatgcatctaaggttagcacagacaccgcatcacga |
117 |
Q |
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| T |
40948010 |
cttcttcccaacatcaaatttcgcagttgcccatggggctgtgcctacatttctttttgagtctgatgcatctaaggttagcacagacaccgcatcacga |
40947911 |
T |
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| Q |
118 |
gaggcagaccaggaatgaccgcaagctatgcattccagctgaacaagcagagcaaaagttaaaccgaagtcacaaaaagcacaggagatgaatttgatat |
217 |
Q |
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| T |
40947910 |
gaggcagaccaggaatgaccacaagctatgcattccagctgaacaagcagagcaaaaattaaaccgaagtcacaaaaactacaggagatgaatttgatat |
40947811 |
T |
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| Q |
218 |
ttgaaatatcagtaaagcattaaggtgctgaccatatatcggtcagcatatcctgcacggataatatccctcacgccaactttttgctcatcgcaaattt |
317 |
Q |
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| T |
40947810 |
ttgaaatatcagtaaagcattaaggcgctgaccatatatcggtcagcatatcctgcacggataatatccctcacgccaactttttgctcatcgcaaattt |
40947711 |
T |
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| Q |
318 |
tgcagcgagcatctgtcatctgtttcaccagta |
350 |
Q |
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| T |
40947710 |
tgcagcgagcatctgtcatctgtttcaccagta |
40947678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 31 - 345
Target Start/End: Complemental strand, 40961191 - 40960871
Alignment:
| Q |
31 |
tcaaatttcgcagttgcccatggggctgtgcctacatttctttttgagtctgatgcatctaaggttagcacagacaccgcatcacgagaggcagaccagg |
130 |
Q |
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| T |
40961191 |
tcaaattttgcagtgacccatgaggctgtgcctgcatttctttttgaatctgatgcatctaatgtcagcacagacaccgcatcacaagaggcagaccaag |
40961092 |
T |
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| Q |
131 |
aatgaccgcaagctatgcattccagctgaacaagcagagcaa-aagttaaaccgaagtcacaaaaagcacaggagatga-atttgatatt----tgaaat |
224 |
Q |
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||||||| || || || ||||||||||||||||||||||||| || ||||| |||| ||||| || |||||| ||| | ||| | |||| |
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| T |
40961091 |
aatgaccacaggcgatacattccagctgaacaagcagagcaacaatcaaaacccgggtcattaaaagtgcattagatgagtttttaaattttaattaaat |
40960992 |
T |
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| Q |
225 |
atcagtaaagcattaaggtgctgaccatatatcggtcagcatatcctgcacggataatatccctcacgccaactttttgctcatcgcaaattttgcagcg |
324 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| || || ||||| |||| ||||| |||||| | |
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| T |
40960991 |
atcagtaaagcattaaggtgcaaaccatatatcggtcagcaagtcctgcacgaataatatcccttacacccactttacgctctgtgcaaagtttgcaact |
40960892 |
T |
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| Q |
325 |
agcatctgtcatctgtttcac |
345 |
Q |
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||||||||||||||||||||| |
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| T |
40960891 |
agcatctgtcatctgtttcac |
40960871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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