View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_17 (Length: 339)
Name: NF20254_low_17
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 18215590 - 18215909
Alignment:
| Q |
18 |
tcttgaaactaagatatacgtacaggttcatacatgatagtgattagtggccatatcctaggttggtaacattaccttctggattccttgctaagagtgc |
117 |
Q |
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| T |
18215590 |
tcttgaaactaagatatacgtacaggttcatacatgatagtgattagtggccatatcctaggatggtaacattaccttctggattccttgctaagagtgc |
18215689 |
T |
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| Q |
118 |
gtcttttaccttttgaaaatgaatttcttaaagtgaagctatttatatttgaatttatagcacgagataaatattaaatgagtttcagagttgaagataa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18215690 |
gtcttttaccttttgaaaatgaatttcttaaagtgaagctatttatatttgaatttatagcacgagataaatattaaatgagtttcagagttgaagataa |
18215789 |
T |
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| Q |
218 |
agttactatggactaaagatgaaagtatttatttttaaggactattaaaccaaaattgagttatgatttggaatgtgtatgtgtatgtacttccattaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18215790 |
agttactatggactaaagatgaaagtatttatttttaaggactattaaaccaaaattgagttatgatttggaatgtgtatgtgtatgtacttccattaac |
18215889 |
T |
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| Q |
318 |
tgtgtatttatagaataatc |
337 |
Q |
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|||||||||||||||||||| |
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| T |
18215890 |
tgtgtatttatagaataatc |
18215909 |
T |
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