View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_19 (Length: 325)
Name: NF20254_low_19
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_19 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 34182477 - 34182184
Alignment:
| Q |
16 |
attatacattaagagtaccattgtcttcaccaaattgcattccttctgtggcatttttaggattccaattaaagcattcagtatcaccatcccttacgtt |
115 |
Q |
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| T |
34182477 |
attatactttaagagtaccattttcttcaccaaattgcattccttctgtggcatttttaggattccaattaaagcattcagtatcaccatcccttacgtt |
34182378 |
T |
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| Q |
116 |
acatggtgctgatttatttattgtccaatgacaatctcctttgcaagttttgtcatctcgtacttcaacataaatgtcaaagtattgaatttctttcatc |
215 |
Q |
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| T |
34182377 |
acatggtgctaatttatttattgtccaatgacaatctcctttgcaagttttgtcatctcgtacttcaacataaatgtcaaagtattgaatttctttcatc |
34182278 |
T |
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| Q |
216 |
caatgaaatccgcaaaagtataattctgcttctaaaaagatcctaggcctaaaagaaaaactgtaagtttctccaaattttagtgtgtgatacc |
309 |
Q |
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| T |
34182277 |
caatgaaatccgcaaaagtataattctgcttctaaaaagatcctaggcctaaaaaaaaaactgtaagtttctccaaattttagtgtgtgatacc |
34182184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 25 - 298
Target Start/End: Complemental strand, 17209 - 16936
Alignment:
| Q |
25 |
taagagtaccattgtcttcaccaaattgcattccttctgtggcatttttaggattccaattaaagcattcagtatcaccatcccttacgttacatggtgc |
124 |
Q |
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| T |
17209 |
taagagtactattctcttcaccaagttgtcttccttctgtgacattgttaggtttccaaggaaaacattctgtatcatcaccctttaacttacacggtcc |
17110 |
T |
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| Q |
125 |
tgatttatttattgtccaatgacaatctcctttgcaagttttgtcatctcgtacttcaacataaatgtcaaagtattgaatttctttcatccaatgaaat |
224 |
Q |
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|||||||| |||| ||||| |||| |||||||||||| ||| ||||||||| ||||||||||||||||||| || || ||| ||||||||| |||| |
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| T |
17109 |
tgatttatctattttccaacgacattctcctttgcaatctttatcatctcgtgattcaacataaatgtcaaagcgtttaagttcattcatccaagaaaat |
17010 |
T |
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| Q |
225 |
ccgcaaaagtataattctgcttctaaaaagatcctaggcctaaaagaaaaactgtaagtttctccaaattttag |
298 |
Q |
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| T |
17009 |
ccacaaaagtataattttgcttctataaagattacaggcctaaatgaaaagctataagtttctccaaaatttag |
16936 |
T |
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