View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_20 (Length: 305)
Name: NF20254_low_20
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 298
Target Start/End: Original strand, 30579508 - 30579792
Alignment:
| Q |
14 |
gttaggaacaagatattgaggaagaggattcatgtccgagtggagcatgttatgccatcaaggtgcactgaggagttcaggttgaggaagatcaagaatg |
113 |
Q |
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| T |
30579508 |
gttaggaacaagatattgaggaagaggatccatgtccgagtggagcatgttatgccatcaaggtgcactgaggagttcagattgaggaagatcaagaatg |
30579607 |
T |
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| Q |
114 |
atcaattgaaggctgaggctaaggccaagggagaggtgataagcaccaagcccaagccagagggccccaaacctggtttcatggtcgaaggtgctacatt |
213 |
Q |
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| T |
30579608 |
atcaattgaaggctgaggctaaggccaagggagaggtgataagcaccaagcgcaagccagagggccccaaacctggtttcatggtcgaaggtgctacatt |
30579707 |
T |
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| Q |
214 |
ggagactgttactccaattccgtacgatgtcgttaatgatctcaaaggaggatactaggattttatttgcattttcttcttctct |
298 |
Q |
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| T |
30579708 |
ggagactgttactccaattccgtatgatgtcgttaatgatctcaaaggaggatactaggattttatttgcactttctacttctct |
30579792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 43829255 - 43829509
Alignment:
| Q |
17 |
aggaacaagatattgaggaagaggattcatgtccgagtggagcatgttatgccatcaaggtgcactgaggagttcaggttgaggaagatcaagaatgatc |
116 |
Q |
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| T |
43829255 |
aggaacaagattctcaggaagagaatccacgttcgagtggagcatgttatgccttctaggtgcactgaggagttccgtttgaggaagattaagaatgatc |
43829354 |
T |
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| Q |
117 |
aattgaaggctgaggctaaggccaagggagaggtgataagcaccaagcccaagccagagggccccaaacctggtttcatggtcgaaggtgctacattgga |
216 |
Q |
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| T |
43829355 |
aacttaaggctgaggctaaggcaaagggtgaagtcattagcaccaagcgcaagccagagggacctaaacctggtttcatggtcgaaggagctacattgga |
43829454 |
T |
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| Q |
217 |
gactgttactccaattccgtacgatgtcgttaatgatctcaaaggaggatactag |
271 |
Q |
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| T |
43829455 |
aactgttactccaattccatatgatgtggttaatgatcttaagggaggatactag |
43829509 |
T |
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