View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20254_low_22 (Length: 301)

Name: NF20254_low_22
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20254_low_22
NF20254_low_22
[»] chr8 (8 HSPs)
chr8 (147-285)||(29099607-29099745)
chr8 (7-146)||(29099803-29099939)
chr8 (92-141)||(7289268-7289317)
chr8 (107-146)||(422280-422319)
chr8 (107-145)||(5590432-5590470)
chr8 (107-145)||(24532485-24532523)
chr8 (107-145)||(34236712-34236750)
chr8 (116-144)||(28213168-28213196)
[»] chr5 (9 HSPs)
chr5 (107-145)||(18333529-18333567)
chr5 (92-145)||(37782114-37782167)
chr5 (94-146)||(37781696-37781748)
chr5 (107-145)||(15480304-15480342)
chr5 (107-145)||(17150297-17150335)
chr5 (117-146)||(18885453-18885482)
chr5 (112-145)||(37657001-37657034)
chr5 (90-146)||(9368560-9368616)
chr5 (107-143)||(38976915-38976951)
[»] chr4 (3 HSPs)
chr4 (107-145)||(35645829-35645867)
chr4 (107-141)||(42662445-42662479)
chr4 (116-145)||(400629-400658)
[»] chr1 (12 HSPs)
chr1 (107-144)||(52961564-52961601)
chr1 (107-142)||(33156951-33156986)
chr1 (107-145)||(7826095-7826133)
chr1 (107-145)||(20208590-20208628)
chr1 (107-145)||(25713375-25713413)
chr1 (107-141)||(26603410-26603444)
chr1 (107-145)||(35772246-35772284)
chr1 (107-145)||(38733134-38733172)
chr1 (107-145)||(40524715-40524753)
chr1 (116-145)||(26173520-26173549)
chr1 (112-145)||(34264774-34264807)
chr1 (116-144)||(42819291-42819319)
[»] chr3 (7 HSPs)
chr3 (107-146)||(46794036-46794075)
chr3 (90-145)||(54567857-54567912)
chr3 (111-145)||(13741166-13741200)
chr3 (107-145)||(22729082-22729120)
chr3 (107-145)||(34992532-34992570)
chr3 (107-144)||(38791515-38791552)
chr3 (107-143)||(52994760-52994796)
[»] chr2 (2 HSPs)
chr2 (106-145)||(9927892-9927931)
chr2 (107-145)||(16419484-16419522)
[»] scaffold0129 (2 HSPs)
scaffold0129 (107-145)||(14285-14323)
scaffold0129 (107-145)||(14520-14558)
[»] chr7 (5 HSPs)
chr7 (107-145)||(3520104-3520142)
chr7 (107-145)||(26239980-26240018)
chr7 (107-144)||(36993368-36993405)
chr7 (113-145)||(2404238-2404270)
chr7 (117-145)||(4454768-4454796)
[»] chr6 (4 HSPs)
chr6 (107-145)||(6543007-6543045)
chr6 (107-145)||(12330243-12330281)
chr6 (107-145)||(12330354-12330392)
chr6 (112-145)||(8567022-8567055)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 147 - 285
Target Start/End: Complemental strand, 29099745 - 29099607
Alignment:
Q  147 ttcaaagaacacagtggttaatacttaaatctttaaaccatttagttaaggttcggtacttgaaaatctatgtgttacaagaggttgatatctcatctcc 246  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29099745 ttcaaaaaacacagtggttaatacttaaatctttaaaccatttagttaaggttcggtacttgaaaatctatgtgtaacaagaggttgatatctcatctcc 29099646  T
Q  247 gtaacatatgcatttgcgtgcaagaacatttttgtttat 285  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  29099645 gtaacatatgcatctgcgtgcaagaacatttttgtttat 29099607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 29099939 - 29099803
Alignment:
Q  7 tcgaagaatatgcaagttggtccctcaccacacatactctatcccccggcaagcagtgtattattggtcgtttaaacagcaacactgttaaaagtcttct 106  Q
    ||||| || |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| ||   ||||||||||||| ||||| |||||  |    
T  29099939 tcgaataaaatgcaagttggtccctcaccacacttactctgtcccccggcaagcagtgtgttattgttc---taaacagcaacaccgttaagagtctcat 29099843  T
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgga 146  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29099842 atcgaatagaagatggtctgacaatgtgtttataagtgga 29099803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 7289317 - 7289268
Alignment:
Q  92 tgttaaaagtcttctatcgaataggagatggtctgacaatgtgtttataa 141  Q
    ||||||||||||  |||||||||||||||||||||||||| | |||||||    
T  7289317 tgttaaaagtctcgtatcgaataggagatggtctgacaatatatttataa 7289268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 422319 - 422280
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgga 146  Q
    |||| ||||||||||||||||||||||||||| |||||||    
T  422319 atcggataggagatggtctgacaatgtgtttaaaagtgga 422280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 5590470 - 5590432
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  5590470 atcggataggagatggtctgacaatgtgtttacaagtgg 5590432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 24532523 - 24532485
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  24532523 atcggataggagatggcctgacaatgtgtttataagtgg 24532485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 34236750 - 34236712
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  34236750 atcggataagagatggtctgacaatgtgtttataagtgg 34236712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 28213196 - 28213168
Alignment:
Q  116 gagatggtctgacaatgtgtttataagtg 144  Q
    |||||||||||||||||||||||||||||    
T  28213196 gagatggtctgacaatgtgtttataagtg 28213168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 18333567 - 18333529
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  18333567 atcggataggagatggtctgacaatgtgtttataagtgg 18333529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 37782167 - 37782114
Alignment:
Q  92 tgttaaaagtcttctatcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||||| |||||  ||||| ||||| ||||||||||||||||||||||||||||    
T  37782167 tgttaatagtctcatatcggataggtgatggtctgacaatgtgtttataagtgg 37782114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 37781696 - 37781748
Alignment:
Q  94 ttaaaagtcttctatcgaataggagatggtctgacaatgtgtttataagtgga 146  Q
    |||| |||| || |||| ||||| |||||||||||||||||||||||||||||    
T  37781696 ttaagagtcctcaatcggataggtgatggtctgacaatgtgtttataagtgga 37781748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 15480304 - 15480342
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  15480304 atcggataggtgatggtctgacaatgtgtttataagtgg 15480342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 17150335 - 17150297
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  17150335 atcggataggagatggtctgaaaatgtgtttataagtgg 17150297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 18885453 - 18885482
Alignment:
Q  117 agatggtctgacaatgtgtttataagtgga 146  Q
    ||||||||||||||||||||||||||||||    
T  18885453 agatggtctgacaatgtgtttataagtgga 18885482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 37657034 - 37657001
Alignment:
Q  112 ataggagatggtctgacaatgtgtttataagtgg 145  Q
    ||||| ||||||||||||||||||||||||||||    
T  37657034 ataggtgatggtctgacaatgtgtttataagtgg 37657001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 9368560 - 9368616
Alignment:
Q  90 actgttaaaagtcttctatcgaataggagatggtctgacaatgtgtttataagtgga 146  Q
    |||||||| |||| |  |||| |||||||||||  ||||||||||||||||||||||    
T  9368560 actgttaagagtcatacatcggataggagatggcgtgacaatgtgtttataagtgga 9368616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 38976915 - 38976951
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagt 143  Q
    ||||||||||| || ||||||||||||||||||||||    
T  38976915 atcgaataggacattgtctgacaatgtgtttataagt 38976951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 35645867 - 35645829
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  35645867 atcgaataggtgatggtctgacaatgtgtttataagtgg 35645829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 42662445 - 42662479
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataa 141  Q
    |||||||||||||||||||||||||||||||||||    
T  42662445 atcgaataggagatggtctgacaatgtgtttataa 42662479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 400658 - 400629
Alignment:
Q  116 gagatggtctgacaatgtgtttataagtgg 145  Q
    ||||||||||||||||||||||||||||||    
T  400658 gagatggtctgacaatgtgtttataagtgg 400629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 52961564 - 52961601
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtg 144  Q
    |||| |||||||||||||||||||||||||||||||||    
T  52961564 atcggataggagatggtctgacaatgtgtttataagtg 52961601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 33156951 - 33156986
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataag 142  Q
    |||| |||||||||||||||||||||||||||||||    
T  33156951 atcggataggagatggtctgacaatgtgtttataag 33156986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 7826133 - 7826095
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  7826133 atcgaataaaagatggtctgacaatgtgtttataagtgg 7826095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 20208628 - 20208590
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  20208628 atcggataggacatggtctgacaatgtgtttataagtgg 20208590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 25713375 - 25713413
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  25713375 atcggataggtgatggtctgacaatgtgtttataagtgg 25713413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 26603410 - 26603444
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataa 141  Q
    ||||||||||||||||||||||||| |||||||||    
T  26603410 atcgaataggagatggtctgacaatatgtttataa 26603444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 35772246 - 35772284
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  35772246 atcggataggagatggcctgacaatgtgtttataagtgg 35772284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 38733134 - 38733172
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  38733134 atcgaatatgtgatggtctgacaatgtgtttataagtgg 38733172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 40524753 - 40524715
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  40524753 atcgaatatgagatggtctgacagtgtgtttataagtgg 40524715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 26173549 - 26173520
Alignment:
Q  116 gagatggtctgacaatgtgtttataagtgg 145  Q
    ||||||||||||||||||||||||||||||    
T  26173549 gagatggtctgacaatgtgtttataagtgg 26173520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 34264807 - 34264774
Alignment:
Q  112 ataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||||||| |||||||||||||||||||||||||    
T  34264807 ataggagacggtctgacaatgtgtttataagtgg 34264774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 42819291 - 42819319
Alignment:
Q  116 gagatggtctgacaatgtgtttataagtg 144  Q
    |||||||||||||||||||||||||||||    
T  42819291 gagatggtctgacaatgtgtttataagtg 42819319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 46794036 - 46794075
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgga 146  Q
    |||| ||| |||||||||||||||||||||||||||||||    
T  46794036 atcggataagagatggtctgacaatgtgtttataagtgga 46794075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 54567857 - 54567912
Alignment:
Q  90 actgttaaaagtcttctatcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||||||| |||| | ||||| |||||| |||| ||||||||||||||||||||||    
T  54567857 actgttaagagtcctatatcggataggacatggcctgacaatgtgtttataagtgg 54567912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 13741200 - 13741166
Alignment:
Q  111 aataggagatggtctgacaatgtgtttataagtgg 145  Q
    ||||||||||||| |||||||||||||||||||||    
T  13741200 aataggagatggtttgacaatgtgtttataagtgg 13741166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 22729082 - 22729120
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  22729082 atcggataggagatggtctgacaatgtgtttacaagtgg 22729120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 34992532 - 34992570
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  34992532 atcggataggtgatggtctgacaatgtgtttataagtgg 34992570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 38791552 - 38791515
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtg 144  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  38791552 atcggataggagatggtctgacaatgtatttataagtg 38791515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 52994760 - 52994796
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagt 143  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  52994760 atcgaataggacatgatctgacaatgtgtttataagt 52994796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 9927892 - 9927931
Alignment:
Q  106 tatcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  9927892 tatcggatagaagatggtctgacaatgtgtttataagtgg 9927931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 16419484 - 16419522
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  16419484 atcggataggacatggtctgacaatgtgtttataagtgg 16419522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 14285 - 14323
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  14285 atcggataggtgatggtctgacaatgtgtttataagtgg 14323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 14520 - 14558
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  14520 atcggataggtgatggtctgacaatgtgtttataagtgg 14558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 3520142 - 3520104
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  3520142 atcggataggtgatggtctgacaatgtgtttataagtgg 3520104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 26240018 - 26239980
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  26240018 atcggataggacatggtctgacaatgtgtttataagtgg 26239980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 36993405 - 36993368
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtg 144  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  36993405 atcgaataggatatggtctgacaatatgtttataagtg 36993368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 2404270 - 2404238
Alignment:
Q  113 taggagatggtctgacaatgtgtttataagtgg 145  Q
    |||||||||| ||||||||||||||||||||||    
T  2404270 taggagatggactgacaatgtgtttataagtgg 2404238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 4454768 - 4454796
Alignment:
Q  117 agatggtctgacaatgtgtttataagtgg 145  Q
    |||||||||||||||||||||||||||||    
T  4454768 agatggtctgacaatgtgtttataagtgg 4454796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 6543045 - 6543007
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  6543045 atcggataagagatggtctgacaatgtgtttataagtgg 6543007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 12330281 - 12330243
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  12330281 atcggataggacatggtctgacaatgtgtttataagtgg 12330243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 12330392 - 12330354
Alignment:
Q  107 atcgaataggagatggtctgacaatgtgtttataagtgg 145  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  12330392 atcggataggacatggtctgacaatgtgtttataagtgg 12330354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 145
Target Start/End: Complemental strand, 8567055 - 8567022
Alignment:
Q  112 ataggagatggtctgacaatgtgtttataagtgg 145  Q
    ||||| ||||||||||||||||||||||||||||    
T  8567055 ataggtgatggtctgacaatgtgtttataagtgg 8567022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University