View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20254_low_24 (Length: 294)

Name: NF20254_low_24
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20254_low_24
NF20254_low_24
[»] chr8 (5 HSPs)
chr8 (13-276)||(12200561-12200824)
chr8 (13-276)||(12444989-12445252)
chr8 (13-276)||(12195543-12195806)
chr8 (13-276)||(12439971-12440234)
chr8 (13-268)||(4962095-4962357)
[»] chr4 (15 HSPs)
chr4 (77-276)||(37826633-37826838)
chr4 (13-196)||(45365796-45365982)
chr4 (77-199)||(7790376-7790498)
chr4 (90-277)||(7773481-7773671)
chr4 (77-191)||(7237386-7237500)
chr4 (77-199)||(7771691-7771813)
chr4 (226-276)||(7908553-7908603)
chr4 (151-196)||(7878045-7878090)
chr4 (77-134)||(48853042-48853099)
chr4 (66-134)||(48864396-48864464)
chr4 (176-276)||(48898959-48899059)
chr4 (79-134)||(48147358-48147413)
chr4 (77-134)||(49038521-49038578)
chr4 (77-134)||(49043811-49043868)
chr4 (159-196)||(50669384-50669421)
[»] chr5 (2 HSPs)
chr5 (77-191)||(9120067-9120181)
chr5 (91-189)||(179364-179462)
[»] chr3 (3 HSPs)
chr3 (160-272)||(11024223-11024335)
chr3 (66-196)||(47451532-47451662)
chr3 (77-134)||(11024146-11024203)
[»] chr1 (2 HSPs)
chr1 (160-275)||(24340634-24340749)
chr1 (160-275)||(24352999-24353114)
[»] chr6 (1 HSPs)
chr6 (223-276)||(21979420-21979473)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 12200824 - 12200561
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12200824 aatatcaccactttttgtagagtatataggggaaaagcaatgcatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 12200725  T
Q  113 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataatacataggaccat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12200724 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaatacccacaaaccataatacataagaccat 12200625  T
Q  213 ggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaat 276  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12200624 ggttgaaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaat 12200561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 12445252 - 12444989
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12445252 aatatcaccactttttgtagagtatataggggaaaagcaatgcatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 12445153  T
Q  113 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataatacataggaccat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12445152 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaatacccacaaaccataatacataagaccat 12445053  T
Q  213 ggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaat 276  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12445052 ggttgaaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaat 12444989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 12195806 - 12195543
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 112  Q
    ||||||||||||||||||||||||||  |||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||| ||  |  ||||||||    
T  12195806 aatatcaccactttttgtagagtatacgggggaaaaccaaggtatgtcattgtcaataggaattacaagagtcttagtccaagatgattgttgtttgtat 12195707  T
Q  113 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataatacataggaccat 212  Q
      ||||||| ||||||||||||  ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |   |||||||    
T  12195706 tctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccataatgctctggaccat 12195607  T
Q  213 ggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaat 276  Q
    ||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  12195606 ggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaat 12195543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 12440234 - 12439971
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 112  Q
    ||||||||||||||||||||||||||  |||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||| ||  |  ||||||||    
T  12440234 aatatcaccactttttgtagagtatacgggggaaaaccaaggtatgtcattgtcaataggaattacaagagtcttagtccaagatgattgttgtttgtat 12440135  T
Q  113 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataatacataggaccat 212  Q
      ||||||| ||||||||||||  ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |   |||||||    
T  12440134 tctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccataatgctctggaccat 12440035  T
Q  213 ggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaat 276  Q
    ||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  12440034 ggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaat 12439971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 4962095 - 4962357
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgccaataggaattacaagagtcttggtccaagacga---acgcagtttg 109  Q
    ||||||||||||||||||||| ||||| ||||||||| ||   |||| |    |||||||||||| ||||||||| ||||| |||||   | ||||||||    
T  4962095 aatatcaccactttttgtagaatatattggggaaaagaaacaaatgttacgatcaataggaattagaagagtcttagtccacgacgacgaatgcagtttg 4962194  T
Q  110 tatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataa--tac--ata 205  Q
    |||  ||||||| ||||||||||||   |   |||   | ||| |||   ||||||||| ||||||||||||||||||||||||||||||  |||  | |    
T  4962195 tattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaaccataacttacagaca 4962294  T
Q  206 ggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaag 268  Q
    ||  ||| ||  |||| ||  |||||||| ||||||| |||||||||||||||||||||||||    
T  4962295 ggttcatagtcaaaatcattgggaagaggcatctctaacaatttcctttccattaaatcaaag 4962357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 276
Target Start/End: Original strand, 37826633 - 37826838
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaatt 176  Q
    ||||||||||| |||||||||||| |||||||||||  ||||||| ||| || || ||| || ||||||| |     |||   ||||||||| |||||||    
T  37826633 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaatt 37826732  T
Q  177 ctccaaatacccacaaaccataatacataggaccatggttgaaataatctggaa---ga---ggtatctctaccaatttcctttccattaaatcaaaggc 270  Q
    |||||||||||||||||||| ||||   |||| ||| ||  |||| ||||||||   ||   |||||||||| || ||||||||||||||||| ||||||    
T  37826733 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaactggaacgggtatctctaacagtttcctttccattaaattaaaggc 37826832  T
Q  271 aacaat 276  Q
    ||||||    
T  37826833 aacaat 37826838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 45365796 - 45365982
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgcca---ataggaattacaagagtcttggtccaagacgaacgcagtttg 109  Q
    ||||||||| |||||||||||| ||| |||||||||| | ||  ||  | |||||   |||||||  ||  ||||||| |||||||||||||||| |||     
T  45365796 aatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcacttta 45365895  T
Q  110 tatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaacca 196  Q
    |||  ||||||| ||||||||||||  || | ||||||| ||| ||||  ||| | ||| | |||||||||||||||||||||||||    
T  45365896 tattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaacca 45365982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 7790498 - 7790376
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaatt 176  Q
    |||||||| || |||||||||||| ||| |||||||  ||||||| ||||||||||||  || | ||||||| ||| | ||   |||| ||| |||||||    
T  7790498 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaactgagaaatt 7790399  T
Q  177 ctccaaatacccacaaaccataa 199  Q
    |||||||||||||||||| ||||    
T  7790398 ctccaaatacccacaaactataa 7790376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 277
Target Start/End: Original strand, 7773481 - 7773671
Alignment:
Q  90 tccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaataccca 189  Q
    ||||||||||| ||| |||||||  ||||||| ||||||||||||  || | |||| ||  || | ||  ||||| ||| ||| ||||||||||||||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccca 7773580  T
Q  190 caaaccataata---cataggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaatt 277  Q
    ||||||| |||    ||  | || |||||  | || || ||||||||| ||||| | |||||||||||||||||||||||||| |||||||    
T  7773581 caaaccagaatgtaccaatgcactatggtgaacattatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaatt 7773671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 7237386 - 7237500
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaatt 176  Q
    |||||||| || |||||| ||||| ||| |||||||  ||||||| |||||||| |||  || | ||||||| ||| |  |  ||||||||| |||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaatt 7237485  T
Q  177 ctccaaatacccaca 191  Q
    |||||||||||||||    
T  7237486 ctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 7771813 - 7771691
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaatt 176  Q
    |||||||| || ||||| |||||| ||| |||||||  ||||||| |||||||| |||  || | ||||||| ||| | ||   |||| ||| |||||||    
T  7771813 acaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgagaaatt 7771714  T
Q  177 ctccaaatacccacaaaccataa 199  Q
    |||||||||||||||||| ||||    
T  7771713 ctccaaatacccacaaactataa 7771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 7908603 - 7908553
Alignment:
Q  226 tggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaat 276  Q
    ||||| ||||||||| | ||| |||||||||||||||||||||||||||||    
T  7908603 tggaataggtatctcaaacaacttcctttccattaaatcaaaggcaacaat 7908553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 7878090 - 7878045
Alignment:
Q  151 attcatattccatagactcagaaattctccaaatacccacaaacca 196  Q
    |||||||  ||||||||| |||||||||||||||||||||||||||    
T  7878090 attcatagcccatagactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 48853099 - 48853042
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    ||||||||||| |||||||||||||||| |||||||  ||||||  ||||||||||||    
T  48853099 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaa 48853042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 48864464 - 48864396
Alignment:
Q  66 caataggaattacaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    |||||||||  |||||| |||| |||||||||||| ||| |||||||  ||||||| ||||||||||||    
T  48864464 caataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 48899059 - 48898959
Alignment:
Q  176 tctccaaatacccacaaaccataatacataggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaa 275  Q
    |||||||| |||||||||||| ||| |  ||||  ||| |  |||| ||||||| |||  ||||||| || |||||||||| ||||||||||||||||||    
T  48899059 tctccaaagacccacaaaccacaatcctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaa 48898960  T
Q  276 t 276  Q
    |    
T  48898959 t 48898959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 48147358 - 48147413
Alignment:
Q  79 aagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    ||||||||| |||||||||||| ||| |||||||  ||||||| ||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48147413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 49038521 - 49038578
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    ||||||||||| |||||||||||| | | |||||||  ||||||| ||||||||||||    
T  49038521 acaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaa 49038578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 49043811 - 49043868
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    ||||||||||| ||||| |||||| ||| |||||||  ||||||| ||||||||||||    
T  49043811 acaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaa 49043868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 50669421 - 50669384
Alignment:
Q  159 tccatagactcagaaattctccaaatacccacaaacca 196  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  50669421 tccaaagactgagaaattctccaaatacccacaaacca 50669384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 9120181 - 9120067
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaatt 176  Q
    |||||||| ||  ||||||| ||| ||| |||||||  ||||||| ||||||||||||  || | |||| |||||| ||||  ||||| ||| |||||||    
T  9120181 acaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaatt 9120082  T
Q  177 ctccaaatacccaca 191  Q
    |||||||||||||||    
T  9120081 ctccaaatacccaca 9120067  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 179462 - 179364
Alignment:
Q  91 ccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaataccca 189  Q
    |||||| ||| ||| |||||||  ||||||| ||||||||||||  || | ||||||| ||| ||||  ||||| ||| ||||||| ||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 11024223 - 11024335
Alignment:
Q  160 ccatagactcagaaattctccaaatacccacaaaccataatacataggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccatt 259  Q
    ||||||||| |||||||||||||||| ||||||| || ||| ||||||  |||| |  |||  |||||||| ||| ||||| |  | || |||||||| |    
T  11024223 ccatagactgagaaattctccaaatatccacaaatcacaatccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccctttccact 11024322  T
Q  260 aaatcaaaggcaa 272  Q
    |||||||||||||    
T  11024323 aaatcaaaggcaa 11024335  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 196
Target Start/End: Original strand, 47451532 - 47451662
Alignment:
Q  66 caataggaattacaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatag 165  Q
    |||||||||  |||||||||||   ||||||||||   | |||||||  ||||||| ||||||||||||   | | ||||| | ||| || |  || |||    
T  47451532 caataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttag 47451631  T
Q  166 actcagaaattctccaaatacccacaaacca 196  Q
    ||| |||||||||||||||||||||||||||    
T  47451632 actaagaaattctccaaatacccacaaacca 47451662  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    ||||||||||| |||||||||||| ||| |||||||  ||||||  ||||||||||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 24340749 - 24340634
Alignment:
Q  160 ccatagactcagaaattctccaaatacccacaaaccataatacataggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccatt 259  Q
    ||||||||| |||||| ||| | ||||||| |||||| ||  | ||  ||||||||  |||| |||||| ||||| |||||||| | ||||||||| | |    
T  24340749 ccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttcgact 24340650  T
Q  260 aaatcaaaggcaacaa 275  Q
    || |||||||||||||    
T  24340649 aattcaaaggcaacaa 24340634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 24353114 - 24352999
Alignment:
Q  160 ccatagactcagaaattctccaaatacccacaaaccataatacataggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccatt 259  Q
    ||||||||| |||||| ||| | ||||||| |||||| ||  | ||  ||||||||  |||| |||||| ||||| |||||||| | ||||||||| | |    
T  24353114 ccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttcgact 24353015  T
Q  260 aaatcaaaggcaacaa 275  Q
    || |||||||||||||    
T  24353014 aattcaaaggcaacaa 24352999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 21979420 - 21979473
Alignment:
Q  223 atctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaat 276  Q
    |||||||||||| ||||| |  | ||||||||| ||||||||||||||||||||    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaat 21979473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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