View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_25 (Length: 287)
Name: NF20254_low_25
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 11035435 - 11035693
Alignment:
| Q |
18 |
aaaagaattaacttcagcctctaaaactatcaagattcacacagtttatctctagcattctattatcatccaatcattttatccctaatcttcagaccaa |
117 |
Q |
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| T |
11035435 |
aaaagaattaacttcagcctctaaaactatcaagattcacacagtttatctctagcattctattatcatccaatcattttatccctaatcttcagaccaa |
11035534 |
T |
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| Q |
118 |
aaatttgttctctaatcattccactattataaaatcatttgaaccattaaatcatcctaaacctttttgatacatttatatactctaaaaataatcatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11035535 |
aaatttgttctctaatcattccactattataaaatcatttgaaccattaaatcatcctaaacctttttgatacatttatatactctaaaaataatcatta |
11035634 |
T |
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| Q |
218 |
cgtgtatattctttatagaatctatctacatatttagggagagttgtccctatgttctt |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11035635 |
cgtgtatattctttatagaatctatctacatatttagggagagttgtccctatgttctt |
11035693 |
T |
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