View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_29 (Length: 240)
Name: NF20254_low_29
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_29 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 13210790 - 13211013
Alignment:
| Q |
17 |
cacagaaaaccacacaaaacaaacaaaccatgacattctccacgttcctaaacttcctattcccacccccaccatcactattcatcaccaccatgtccgt |
116 |
Q |
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| T |
13210790 |
cacagaaaaccacacaaaacaaacaaaccatgacattctccacgttcctaaacttcctattcccacccccaccttcactattcatcaccaccatgtctgt |
13210889 |
T |
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| Q |
117 |
cataacatgtgtctcacttgcaaacgcaggtatcaatgaaattagagggaagcatttaaactattccaaattctggaacgtagataataacaatggtgat |
216 |
Q |
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| T |
13210890 |
cataacatgtgtctcccttgcaaacgcaggtatcaatgaagttagagggaagcatttaaactattccaaattctggaacgtagaaaataacaatggtgat |
13210989 |
T |
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| Q |
217 |
aagaagaagaagaagatgataaaa |
240 |
Q |
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| T |
13210990 |
aagaagaagaagaagatgataaaa |
13211013 |
T |
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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 13184804 - 13184860
Alignment:
| Q |
153 |
tgaaattagagggaagcatttaaactattccaaattctggaacgtagataataacaa |
209 |
Q |
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| T |
13184804 |
tgaaattagaggaaagcatttgaattattccaaattttggaatgcaaataataacaa |
13184860 |
T |
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