View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20254_low_3 (Length: 671)

Name: NF20254_low_3
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20254_low_3
NF20254_low_3
[»] chr7 (14 HSPs)
chr7 (37-278)||(3705902-3706149)
chr7 (35-119)||(3702969-3703055)
chr7 (177-243)||(3693354-3693420)
chr7 (56-107)||(3700673-3700724)
chr7 (42-105)||(3693200-3693265)
chr7 (35-105)||(3685512-3685586)
chr7 (35-100)||(3694961-3695027)
chr7 (182-242)||(3685618-3685678)
chr7 (41-97)||(3651463-3651521)
chr7 (142-241)||(3701070-3701169)
chr7 (592-649)||(6344152-6344209)
chr7 (598-653)||(29937142-29937197)
chr7 (596-649)||(2317478-2317531)
chr7 (297-330)||(3700872-3700905)
[»] chr1 (6 HSPs)
chr1 (594-656)||(25388354-25388416)
chr1 (605-651)||(3873903-3873949)
chr1 (597-649)||(28381534-28381586)
chr1 (593-652)||(27800813-27800872)
chr1 (596-649)||(30713395-30713448)
chr1 (596-656)||(9990619-9990680)
[»] chr2 (5 HSPs)
chr2 (593-650)||(37532790-37532847)
chr2 (593-651)||(1467576-1467634)
chr2 (592-649)||(36930756-36930813)
chr2 (597-649)||(13415254-13415306)
chr2 (597-651)||(27951935-27951989)
[»] chr8 (3 HSPs)
chr8 (597-649)||(39297990-39298042)
chr8 (596-632)||(9445394-9445430)
chr8 (592-636)||(26259754-26259798)
[»] chr6 (4 HSPs)
chr6 (592-648)||(33821005-33821061)
chr6 (597-652)||(11970453-11970508)
chr6 (597-643)||(28633770-28633816)
chr6 (592-649)||(15601895-15601952)
[»] chr5 (4 HSPs)
chr5 (594-649)||(28449274-28449329)
chr5 (592-649)||(33018937-33018994)
chr5 (597-649)||(35836780-35836832)
chr5 (592-637)||(22100362-22100407)
[»] chr4 (3 HSPs)
chr4 (597-649)||(17874467-17874519)
chr4 (596-649)||(50016067-50016120)
chr4 (600-651)||(43128100-43128151)
[»] scaffold0024 (1 HSPs)
scaffold0024 (596-632)||(87717-87753)
[»] chr3 (4 HSPs)
chr3 (612-651)||(6985471-6985510)
chr3 (612-651)||(8129520-8129559)
chr3 (592-643)||(8440927-8440978)
chr3 (592-637)||(25783087-25783132)
[»] scaffold0036 (1 HSPs)
scaffold0036 (597-651)||(45325-45379)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 9e-41; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 37 - 278
Target Start/End: Original strand, 3705902 - 3706149
Alignment:
Q  37 tatcatgattaattgtagcaacagtttatgtaactttt--taatgtctcaaattatgtttattggaatatt--------tagcttattctattcttcatg 126  Q
    |||||| |||||||||||||||||||||||||||||||  ||||||||||| || ||||||||||||| ||        ||| |||||||||| ||||||    
T  3705902 tatcattattaattgtagcaacagtttatgtaacttttaataatgtctcaacttctgtttattggaatgttatttagattagattattctatt-ttcatg 3706000  T
Q  127 cagac-aaaaagtttaaggtcggaacattgaggtcatttttagaaatatgagtgtgaatgtttataaacctttcttattctcaattaggttgaccggttc 225  Q
     | || ||||||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||   ||||||||||||||||| |||    |||    
T  3706001 tataccaaaaagtttaaggtcggaacattaaggtcattttcagaaacatgagtctgaatgtttataaactagtcttattctcaattagggtga-tttttc 3706099  T
Q  226 tggtgtaattcggtatggaaattcatgttatttcgagcaggagctgatgtaca 278  Q
    |||||||||||||  ||||||  ||||||||||||||||| ||||| ||||||    
T  3706100 tggtgtaattcgg--tggaaa-ccatgttatttcgagcagaagctgttgtaca 3706149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 3702969 - 3703055
Alignment:
Q  35 catatcatgattaattgtagcaacagtttatgtaactttt--taatgtctcaaattatgtttattggaatatttagcttattctatt 119  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||| |||||||||| |||||||| ||||||||||    
T  3702969 catatcatgattaattgtggcaacagtttatgtaacttttaataatgtctcaaattctgtttattgggatatttagattattctatt 3703055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 3693354 - 3693420
Alignment:
Q  177 gtgtgaatgtttataaacctttcttattctcaattaggttgaccggttctggtgtaattcggtatgg 243  Q
    ||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  3693354 gtgtgaatgtttataaaccattcttattctcaattagggtgatcggttctggtgtaattcggtatgg 3693420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 3700673 - 3700724
Alignment:
Q  56 aacagtttatgtaactttttaatgtctcaaattatgtttattggaatattta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3700673 aacagtttatgtaactttttaatgtctcaaattatgtttattggaatattta 3700724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 3693200 - 3693265
Alignment:
Q  42 tgattaattgtagcaacagtttatgtaactttt--taatgtctcaaattatgtttattggaatatt 105  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  3693200 tgattaattgtagcaacagtttatgtaacttttaataatgtcttaaattatgtttattggaatatt 3693265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 3685512 - 3685586
Alignment:
Q  35 catatcatgattaattgtagcaacagtttatgtaactttt--taatg--tctcaaattatgtttattggaatatt 105  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||  ||||||||| ||||||||||||||||    
T  3685512 catatcatgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatatt 3685586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 35 - 100
Target Start/End: Original strand, 3694961 - 3695027
Alignment:
Q  35 catatcatgattaattgtagcaacagtttatgtaactttt--taatgtctcaaattatgtttattgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||| | |||||||||||    
T  3694961 catatcatgattaattgtagcaacagtttatgtaacttttaataatgtctcaaa-tctgtttattgga 3695027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 3685618 - 3685678
Alignment:
Q  182 aatgtttataaacctttcttattctcaattaggttgaccggttctggtgtaattcggtatg 242  Q
    |||||||||||||  ||| |||||||||||||| ||| |||||||||||||||||||||||    
T  3685618 aatgtttataaactgttcctattctcaattagggtgatcggttctggtgtaattcggtatg 3685678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 3651521 - 3651463
Alignment:
Q  41 atgattaattgtagcaacagtttatgtaactttt--taatgtctcaaattatgtttatt 97  Q
    ||||||||||||||||||||||||||||||||||  ||||||| |||||| || |||||    
T  3651521 atgattaattgtagcaacagtttatgtaacttttaataatgtcccaaattctgcttatt 3651463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 3701070 - 3701169
Alignment:
Q  142 aggtcggaacattgaggtcatttttagaaatatgagtgtgaatgtttataaacctttcttattctcaattaggttgaccggttctggtgtaattcggtat 241  Q
    |||||| | |||||| || | ||||||||||||||||| |||||| | |||||  |||||||||||||||||| | | |||| ||||| |||| ||||||    
T  3701070 aggtcgaagcattgatgttacttttagaaatatgagtgagaatgtgtgtaaactattcttattctcaattagggtaatcggtactggtctaatccggtat 3701169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 649
Target Start/End: Original strand, 6344152 - 6344209
Alignment:
Q  592 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    ||||||||||||||||||  |  ||||||||||||||||||| ||||||||| |||||    
T  6344152 tcatttgtggtggtcgagccctatgtcgtgtttaggcattgggtaaccacttcttgta 6344209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 598 - 653
Target Start/End: Original strand, 29937142 - 29937197
Alignment:
Q  598 gtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtattct 653  Q
    |||||||||||||   |||| ||||||||| ||||||||| |||||||||||||||    
T  29937142 gtggtggtcgagtcatttgttgtgtttaggtattggctaatcacttgttgtattct 29937197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 649
Target Start/End: Complemental strand, 2317531 - 2317478
Alignment:
Q  596 ttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    |||||||||||||||   |||||||||||||||||||| || |||||| |||||    
T  2317531 ttgtggtggtcgagtctcttgtcgtgtttaggcattggttagccacttcttgta 2317478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 3700872 - 3700905
Alignment:
Q  297 taatcactgagaaaaagaatcactcaacctatat 330  Q
    |||||||||||||||| |||||||||||||||||    
T  3700872 taatcactgagaaaaataatcactcaacctatat 3700905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 594 - 656
Target Start/End: Complemental strand, 25388416 - 25388354
Alignment:
Q  594 atttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtattctgtg 656  Q
    ||||||||||||||||| | ||||||||||||| ||||||||| |||||||||||||||||||    
T  25388416 atttgtggtggtcgagtcctttgtcgtgtttagacattggctagccacttgttgtattctgtg 25388354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 605 - 651
Target Start/End: Complemental strand, 3873949 - 3873903
Alignment:
Q  605 tcgagttcattgtcgtgtttaggcattggctaaccacttgttgtatt 651  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  3873949 tcgagtccattgtcgtgtttaggcattgactaaccacttgttgtatt 3873903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 649
Target Start/End: Complemental strand, 28381586 - 28381534
Alignment:
Q  597 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    |||||| ||||| | |||||||||||||||||||||| |||||||||||||||    
T  28381586 tgtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgta 28381534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 593 - 652
Target Start/End: Complemental strand, 27800872 - 27800813
Alignment:
Q  593 catttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtattc 652  Q
    |||||||||||||||||| | ||||| | ||||||||||| ||| |||||||||||||||    
T  27800872 catttgtggtggtcgagtcctttgtcctatttaggcattgactagccacttgttgtattc 27800813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 596 - 649
Target Start/End: Original strand, 30713395 - 30713448
Alignment:
Q  596 ttgtggtggtcgagt-tcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||||| |||||    
T  30713395 ttgtggtggtcgagtctcat-gtcgtgtttaggcattggataaccacttcttgta 30713448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 656
Target Start/End: Complemental strand, 9990680 - 9990619
Alignment:
Q  596 ttgtggtggtcgagttcattgtcgtgtttaggcattggcta-accacttgttgtattctgtg 656  Q
    |||||||| |||||| |||||||||||||||||||||  || || | |||||||||||||||    
T  9990680 ttgtggtgatcgagtccattgtcgtgtttaggcattgtgtagactatttgttgtattctgtg 9990619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 593 - 650
Target Start/End: Original strand, 37532790 - 37532847
Alignment:
Q  593 catttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtat 650  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||    
T  37532790 catttgtggtggtcgagttcattgtcgtgtctaggcattgactaaccacattttgtat 37532847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 651
Target Start/End: Complemental strand, 1467634 - 1467576
Alignment:
Q  593 catttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtatt 651  Q
    ||||||||||||||||| || |||||||||||| ||||||||| ||| |||||||||||    
T  1467634 catttgtggtggtcgagctctttgtcgtgtttatgcattggctgacctcttgttgtatt 1467576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 649
Target Start/End: Complemental strand, 36930813 - 36930756
Alignment:
Q  592 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    ||||||||||||||||||  |  ||||||||||||||||||| ||||||||| |||||    
T  36930813 tcatttgtggtggtcgagccctatgtcgtgtttaggcattggttaaccacttcttgta 36930756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 649
Target Start/End: Complemental strand, 13415306 - 13415254
Alignment:
Q  597 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    |||||| ||||| | |||||||||||||||||||||| |||| ||||||||||    
T  13415306 tgtggttgtcgaatccattgtcgtgtttaggcattggttaacaacttgttgta 13415254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 651
Target Start/End: Original strand, 27951935 - 27951989
Alignment:
Q  597 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtatt 651  Q
    |||||| ||||| | |||||||||||||||||||||| | || ||||||||||||    
T  27951935 tgtggttgtcgaatccattgtcgtgtttaggcattggttgacaacttgttgtatt 27951989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 597 - 649
Target Start/End: Original strand, 39297990 - 39298042
Alignment:
Q  597 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||||||||||    
T  39297990 tgtggttgtcgaattcattgtcgtgtttaggcattggttaaccacttgttgta 39298042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 632
Target Start/End: Original strand, 9445394 - 9445430
Alignment:
Q  596 ttgtggtggtcgagttcattgtcgtgtttaggcattg 632  Q
    ||||||||||||||| |||||||||||||||||||||    
T  9445394 ttgtggtggtcgagtccattgtcgtgtttaggcattg 9445430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 636
Target Start/End: Complemental strand, 26259798 - 26259754
Alignment:
Q  592 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggcta 636  Q
    |||||||||||||  ||| || |||||||||||||||||||||||    
T  26259798 tcatttgtggtggatgagctctttgtcgtgtttaggcattggcta 26259754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 592 - 648
Target Start/End: Complemental strand, 33821061 - 33821005
Alignment:
Q  592 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgt 648  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||    
T  33821061 tcatttgtggtggttgagttcattgtcgtgtttaggcattggttaactacttcttgt 33821005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 597 - 652
Target Start/End: Original strand, 11970453 - 11970508
Alignment:
Q  597 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtattc 652  Q
    |||||||||||||| ||||||||| ||||| ||| ||||| |||||||||||||||    
T  11970453 tgtggtggtcgagtccattgtcgtatttagacataggctagccacttgttgtattc 11970508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 597 - 643
Target Start/End: Original strand, 28633770 - 28633816
Alignment:
Q  597 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccactt 643  Q
    ||||||||| |||| |||||||||||||||||||||| |||||||||    
T  28633770 tgtggtggttgagtccattgtcgtgtttaggcattggttaaccactt 28633816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 649
Target Start/End: Complemental strand, 15601952 - 15601895
Alignment:
Q  592 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    ||||||||||||||||||  |  ||||||||||||||||||| ||||||||| |||||    
T  15601952 tcatttgtggtggtcgagccccatgtcgtgtttaggcattggttaaccacttcttgta 15601895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 594 - 649
Target Start/End: Original strand, 28449274 - 28449329
Alignment:
Q  594 atttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    ||||||||||||||||  ||||||||||||||||||||| |||||||||| |||||    
T  28449274 atttgtggtggtcgagcccattgtcgtgtttaggcattgactaaccactttttgta 28449329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 592 - 649
Target Start/End: Original strand, 33018937 - 33018994
Alignment:
Q  592 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    |||||||||||||||||| ||  ||||||||||||||||||| ||||||||| |||||    
T  33018937 tcatttgtggtggtcgagctccatgtcgtgtttaggcattggttaaccacttcttgta 33018994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 649
Target Start/End: Complemental strand, 35836832 - 35836780
Alignment:
Q  597 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    |||||| ||||| | |||||||||| ||||||||||| |||||||||||||||    
T  35836832 tgtggttgtcgaatccattgtcgtgcttaggcattggttaaccacttgttgta 35836780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 637
Target Start/End: Original strand, 22100362 - 22100407
Alignment:
Q  592 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaa 637  Q
    |||||||||||||  |||| | ||||||||||||||||||||||||    
T  22100362 tcatttgtggtggatgagtcctttgtcgtgtttaggcattggctaa 22100407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 649
Target Start/End: Complemental strand, 17874519 - 17874467
Alignment:
Q  597 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    |||||| ||||| | |||||||||||||||||||||| |||||||||||||||    
T  17874519 tgtggttgtcgaatccattgtcgtgtttaggcattggttaaccacttgttgta 17874467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 649
Target Start/End: Original strand, 50016067 - 50016120
Alignment:
Q  596 ttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgta 649  Q
    ||||||||||||||| |  ||||||||||||||||||| ||||||||| |||||    
T  50016067 ttgtggtggtcgagtcccatgtcgtgtttaggcattggttaaccacttcttgta 50016120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 651
Target Start/End: Original strand, 43128100 - 43128151
Alignment:
Q  600 ggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtatt 651  Q
    |||||||||||  |||||||| ||||||||||||||| |||||| |||||||    
T  43128100 ggtggtcgagtctattgtcgtatttaggcattggctagccacttattgtatt 43128151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 596 - 632
Target Start/End: Original strand, 87717 - 87753
Alignment:
Q  596 ttgtggtggtcgagttcattgtcgtgtttaggcattg 632  Q
    ||||||||||||||| |||||||||||||||||||||    
T  87717 ttgtggtggtcgagtccattgtcgtgtttaggcattg 87753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 651
Target Start/End: Complemental strand, 6985510 - 6985471
Alignment:
Q  612 cattgtcgtgtttaggcattggctaaccacttgttgtatt 651  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  6985510 cattgtcgtgtttaggcattggataacaacttgttgtatt 6985471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 612 - 651
Target Start/End: Complemental strand, 8129559 - 8129520
Alignment:
Q  612 cattgtcgtgtttaggcattggctaaccacttgttgtatt 651  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  8129559 cattgtcgtgtttaggcattggttaacaacttgttgtatt 8129520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 643
Target Start/End: Original strand, 8440927 - 8440978
Alignment:
Q  592 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaaccactt 643  Q
    ||||||||||||||||||  |  ||||||||||||||||||| |||||||||    
T  8440927 tcatttgtggtggtcgagccctatgtcgtgtttaggcattggttaaccactt 8440978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 637
Target Start/End: Complemental strand, 25783132 - 25783087
Alignment:
Q  592 tcatttgtggtggtcgagttcattgtcgtgtttaggcattggctaa 637  Q
    ||||||||||||| ||||| ||||||| ||||||||||||| ||||    
T  25783132 tcatttgtggtggacgagtccattgtcatgtttaggcattgtctaa 25783087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 651
Target Start/End: Original strand, 45325 - 45379
Alignment:
Q  597 tgtggtggtcgagttcattgtcgtgtttaggcattggctaaccacttgttgtatt 651  Q
    |||||| ||||| | |||||||||||||||||||||| | || ||||||||||||    
T  45325 tgtggttgtcgaatccattgtcgtgtttaggcattggttgacaacttgttgtatt 45379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University