View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_31 (Length: 237)
Name: NF20254_low_31
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 35481928 - 35481710
Alignment:
| Q |
1 |
tgctgtagagtctgataaagctagaaacgtgattttggaggagctaaatggaaaggctgaagaggaggaagttgaagatgttgtattaaaagtacctgtt |
100 |
Q |
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| T |
35481928 |
tgctgtagagtctgataaagctagaaacgtgattttggaggagttgaatggaaaggctgaagaggagaaggttgaagatgttgtattaaaagtacctgtt |
35481829 |
T |
|
| Q |
101 |
aatgtggtgagattgaagattggtgaagtagctgaggcgacctcggtggttgttttgcccgtgtgtaaagctgaggaaggagaaagggtgattatggaag |
200 |
Q |
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| T |
35481828 |
aatgtggtgagattgaagattggtgaagtagctgaggcgacctcggtggttgttttgcccgtgtgtaaagctgaggaaggagaaagggtgattatggaag |
35481729 |
T |
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| Q |
201 |
caccttctgagataagaaa |
219 |
Q |
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| T |
35481728 |
caccttctgagataagaaa |
35481710 |
T |
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