View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_33 (Length: 230)
Name: NF20254_low_33
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 14638080 - 14638288
Alignment:
| Q |
14 |
atgtaaacgataagtatatacttgatcagaatcaataaatatcaaaatattgaatgtttgcactacaattagatgaattaacaattccaaacataaaatc |
113 |
Q |
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| T |
14638080 |
atgtaaacgataactatatacttgatcagaatcaataaatatcgaaatattgaatgtttgcactacaattagataaattaacaattcgaaacataaaatc |
14638179 |
T |
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| Q |
114 |
taacgtaaatcaaatttatgagtaccattttgatcgatctgtcctattgaccttcagacttgaatcccatcctgttcgcttttttaatcaaagaaattat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | |
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| T |
14638180 |
taacgtaaatcaaatttatgagtaccattttgatcgatctgtcctattgaccttcagacttgaatcccatccagtttgcttttttaatcaaagaaatcac |
14638279 |
T |
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| Q |
214 |
actcgttga |
222 |
Q |
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||||||||| |
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| T |
14638280 |
actcgttga |
14638288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 222
Target Start/End: Original strand, 14631427 - 14631627
Alignment:
| Q |
22 |
gataagtatatacttgatcagaatcaataaatatcaaaatattgaatgtttgcactacaattagatgaattaacaattccaaacataaaatctaacgtaa |
121 |
Q |
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||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||||| |||||| ||||||||| || |||||||||||||||||||| |
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| T |
14631427 |
gataattatatacttgatcagaatcaataaatatcgaattattgaatgtctgcactacacttagatcaattaacaactcgaaacataaaatctaacgtaa |
14631526 |
T |
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| Q |
122 |
atcaaatttatgagtaccattttgatcgatctgtcctattgaccttcagacttgaatcccatcctgttcgcttttttaatcaaagaaattatactcgttg |
221 |
Q |
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|| |||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| | |||||||| |
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| T |
14631527 |
attaaatttatgagtaccatttttatcgatccgtccttttgaccttcggacttgaatcccatcatgttcgcttttttaatcaaagaaatcacactcgttg |
14631626 |
T |
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| Q |
222 |
a |
222 |
Q |
| |
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| T |
14631627 |
a |
14631627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 12890186 - 12890267
Alignment:
| Q |
14 |
atgtaaacgataagtatatacttgatcagaatcaataaatatcaaaatattgaatgtttgcactacaattagatgaattaac |
95 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| | ||||||||| |||||||||| |
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| T |
12890186 |
atgtaaacgataattatatacatgatcagaatcaataaatattgaaatattgaatgtctttactacaattccatgaattaac |
12890267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 15625080 - 15625044
Alignment:
| Q |
192 |
cttttttaatcaaagaaattatactcgttgatgaaat |
228 |
Q |
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| T |
15625080 |
cttttttaatcaaagaaattacactcgttgatgaaat |
15625044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 15648874 - 15648838
Alignment:
| Q |
192 |
cttttttaatcaaagaaattatactcgttgatgaaat |
228 |
Q |
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||||||||||||||||||||| ||||||||||||||| |
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| T |
15648874 |
cttttttaatcaaagaaattacactcgttgatgaaat |
15648838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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