View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_34 (Length: 228)
Name: NF20254_low_34
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_34 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 23178101 - 23178330
Alignment:
| Q |
1 |
agttcatctataagctaccaaatcacgaggtttgattttatcctttactttttcaannnnnnnnnn--acaaatatcatttctctaatatatgttgattt |
98 |
Q |
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| T |
23178101 |
agttcatctataagctaccaaatcacaaggtttgattttatcctttactttttaatttttttttttgtacaaatatcatttctctaatatatgttgattt |
23178200 |
T |
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| Q |
99 |
ttgttgaatttaatgacagcctgttttggaagccaaaatcaccgtagtgaggcttgataaaaactatcgtcctgttcgaatttcagaagatatgaagtct |
198 |
Q |
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| T |
23178201 |
ttgttgaatttaatgacagcctgttttggaagccaaaaccaccgtagtgaggcttgataaaaactatcgtcctcttcgaatttcagaagatatgaagtct |
23178300 |
T |
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| Q |
199 |
aaaatttttaaatatattggtggagacgac |
228 |
Q |
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| T |
23178301 |
aaaatttttaaatgtattggtggagacgac |
23178330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 23223552 - 23223658
Alignment:
| Q |
110 |
aatgacagcctgttttggaagccaaaatcaccgtagtgaggcttgataaaaactatcgtcctgttcgaatttcagaagatatgaagtctaaaatttttaa |
209 |
Q |
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||||||||||| ||||||||||||| ||| | |||| ||||||| ||||||||||||||| |||||||| | | |||||| ||||||||| || |||| |
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| T |
23223552 |
aatgacagcctattttggaagccaaggccacagcagtgtggcttgacaaaaactatcgtcctattcgaattccggcagatattaagtctaaatttgttaa |
23223651 |
T |
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| Q |
210 |
atatatt |
216 |
Q |
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| T |
23223652 |
atttatt |
23223658 |
T |
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