View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_38 (Length: 217)
Name: NF20254_low_38
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 27181178 - 27181354
Alignment:
| Q |
11 |
gagaagaatgaagatacttgtcctttgaatgcacaattagttgaacaagtagtgtctcaagctattcaaaactggagggaagttacacaacaatgacgat |
110 |
Q |
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| T |
27181178 |
gagaagaatgaagatacttgtcctttgaatgcacaatcagttgaacaagtagtgtctcaagctattcaaaactggagggaagttacacaacaatgacgat |
27181277 |
T |
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| Q |
111 |
gaatgatagtatcatacaacaacagctttgtatctaatcagaaaatctatgcttattaatgcttgagtttcccttgttgtt-aggacttttg |
201 |
Q |
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| T |
27181278 |
gaaggatagta---------------tttgtatctaatcagaaaatctatgcttattaatgcttgagtttcccttgttgttaaggacttttg |
27181354 |
T |
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