View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_4 (Length: 583)
Name: NF20254_low_4
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 116 - 579
Target Start/End: Complemental strand, 35026191 - 35025728
Alignment:
| Q |
116 |
tcatatgaaaataggaaggacgcaaataaggtcttgcttgaagcagccaaattgaatttcaatattgtgcaatcaactctacaacaggatcttaaagaaa |
215 |
Q |
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| T |
35026191 |
tcatatgaaaataggaaggacgcaaataaggtcttgcttgaagcagccaaattgaatttcaatattgtgcaatcaactctacaacaggatcttaaagaaa |
35026092 |
T |
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| Q |
216 |
tgtcaaggtaagtttctcaaaatgaatgtacctattattagtatatattagcatgacaaaatatggagaattagtgagaagtgtagagaagtactaaata |
315 |
Q |
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| T |
35026091 |
tgtcaaggtaagtttctcaaaatgaatgtacctattattagtatatattagcatgacaaaatatggaaaattagtgagaagtgtagagaagtactaaata |
35025992 |
T |
|
| Q |
316 |
cgaatcacaattgcggggtcaatttcgttaggagacaagttaatcgagtggtccatgagttagcttgggcatcaagcttttttgctaatcgccaaannnn |
415 |
Q |
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| T |
35025991 |
tgaatcacaattgcggggtcaatttcgttaggagacaagttaatcgagtggtccatgagttagcttgggcatcaagcttttttgctaatcgccaaatttt |
35025892 |
T |
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| Q |
416 |
nnnnnnnngtccacattgtattgagacaattatttttaatgaaatgcagtaagttttagtcatttagagaaggttgcaacttacaacaaaataagaaaca |
515 |
Q |
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| T |
35025891 |
ttatttttgtccacattgtattgagacaattatttttaatgaaatgcagtaagttttagtcatttagagaaggttgcaacttacaacaaaataagaaaca |
35025792 |
T |
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| Q |
516 |
cttggttaccttcttacatggtggttttactcttaactctgatgggttgactttcttctcactc |
579 |
Q |
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| T |
35025791 |
cttggttaccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactc |
35025728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 35026360 - 35026267
Alignment:
| Q |
20 |
atcttatgaaggagaacaaattttggatgaagccaatgctttcactagcatgcacctcaaagaccttagtgaaggtagaagcagtattctcatt |
113 |
Q |
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| T |
35026360 |
atcttatgaaggagaacaaattttggatgaagccaatgctttcactagcatgcacctcaaagaccttagtgaaggtagaagcagtattctcatt |
35026267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 15727667 - 15727519
Alignment:
| Q |
116 |
tcatatgaaaataggaaggacgcaaataaggtcttgcttgaagcagccaaattgaatttcaatattgtgcaatcaactctacaacaggatcttaaagaaa |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
15727667 |
tcatatgaaaataggaaggatgcaaataaggtcttgcttgaagcagctaaattgaatttcaatattgtgcaatcaactcttcaacaggatcttaaagaga |
15727568 |
T |
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| Q |
216 |
tgtcaaggtaagtttctcaaaatgaatgtacctattattagtatatatt |
264 |
Q |
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| T |
15727567 |
tgtcaaggtaagtttctcaaaatgaatgtacctattattagtatatatt |
15727519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 15727836 - 15727743
Alignment:
| Q |
20 |
atcttatgaaggagaacaaattttggatgaagccaatgctttcactagcatgcacctcaaagaccttagtgaaggtagaagcagtattctcatt |
113 |
Q |
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| T |
15727836 |
atcttatgaaggagaacaaattttggatgaagccaatgctttcactagcattcacctcaaagaccttagtgaaggtagaagcagtattctcatt |
15727743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 266 - 341
Target Start/End: Original strand, 36862951 - 36863026
Alignment:
| Q |
266 |
gcatgacaaaatatggagaattagtgagaagtgtagagaagtactaaatacgaatcacaattgcggggtcaatttc |
341 |
Q |
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| T |
36862951 |
gcatgacaaaatatggagaattagtgagaaacgtagaaaactactaaatatgaatcacaactgcagggtcaatttc |
36863026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 524 - 579
Target Start/End: Original strand, 36864102 - 36864157
Alignment:
| Q |
524 |
ccttcttacatggtggttttactcttaactctgatgggttgactttcttctcactc |
579 |
Q |
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| T |
36864102 |
ccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactc |
36864157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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