View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_6 (Length: 512)
Name: NF20254_low_6
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Original strand, 37584294 - 37584781
Alignment:
| Q |
1 |
gataataaataactgtattttgattatttgtgagattaaattaatatttgagttatgatgatagattggatgctatatagtttgctattattgttaagaa |
100 |
Q |
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| T |
37584294 |
gataataaataactgtattttgattatttgtgagattaaattaatatttgagttatgatgatagattggatgctatatagtttgctattattgttaagaa |
37584393 |
T |
|
| Q |
101 |
aacataaatattttaccgtgggatcaaggacatgctcagtgagaggtgctgacaaatacaactttagtgacatgctcattgctcagaattaaccgtggaa |
200 |
Q |
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| T |
37584394 |
aacataaatattttaccgtgggatcaaggacatgctcagtgagaggtgctgacaaatacaactttagtgacatgctcattgctcagaattaaccgtggaa |
37584493 |
T |
|
| Q |
201 |
tgagggagatgaaataggatcaaccatttctcattgctaaattatatggacatgaagtgttaatagcactttctttttaacattctttctaatactctct |
300 |
Q |
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| T |
37584494 |
tgagggagatgaaataggatcaaccatttctcattgctaaattatatggacgagaagtgttaatagcactttctttttaacattctttctaatactctct |
37584593 |
T |
|
| Q |
301 |
cttacaaggtgaaaacgtgactcccacaatttcatattggacttatttccaaagtgagggattcatatttatttcatcaaataaaaacgtgagtattaga |
400 |
Q |
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| T |
37584594 |
cttacaaggtgaaaatgtgactcccacaatttcatattggacttatttccaaagtgagggattcatatttatttcatc-----aaaacgtgagtattaga |
37584688 |
T |
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| Q |
401 |
gagagtgtttatgtagtgagactacagtagaagagtacaaaaaaccctctttccccctggttactttcttattgggagaaggcatcattgattt |
494 |
Q |
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| T |
37584689 |
gagagtgtttatgtagtgagactgcagtagaagagtacaaaaaaccctcttt-cccctggttacttttttattgggagaaggcatcattgattt |
37584781 |
T |
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