View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20254_low_7 (Length: 457)
Name: NF20254_low_7
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20254_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 47121556 - 47121127
Alignment:
| Q |
17 |
taatatctaccatacaatttatttatttatttatttctcttgggacacttgttaagttgttaacactattcacatgagattccccacattatttgttcat |
116 |
Q |
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| T |
47121556 |
taatatctaccatacaatttatttatttatttatttctcttgagacacttgttaagttgttaacactattcacatgagattccccacattatttgttcat |
47121457 |
T |
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| Q |
117 |
tgtctttttgtgcttattggtggagtgtgattgggtaattgggtatgtacaaacacatccaacaaggtcagttttcaagctccaacagcagtatatgcgc |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47121456 |
tgtctttttgtgcttattggtggagtgttattgggtagttgggtttgtacaaacacatccaacaaggtcagttttcaagctccaacagcagtatatgcgc |
47121357 |
T |
|
| Q |
217 |
ttagcaaagcatccaattcgctgtttgtgcgcgatagcttttgatcataatcatccactctacttccccatatttcaggaatcacttctgcaagtgtaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47121356 |
ttagcaaagcatccaattcgctgtttgtgcgcgatagcttttgatcataatcatccactctacttccccatatttcaggaatcacttctgcaagtgtaac |
47121257 |
T |
|
| Q |
317 |
actgttcacacattccactacatagtcccctacattgtttttcactgtctccccaacctaaataataaataaacaaatctcagttaaataaattagttct |
416 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47121256 |
actattcacacattccactacatagtcccctacattgtttttcactgtctccccaacctaaataataaataaacaaatctcagttaaataaattagttct |
47121157 |
T |
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| Q |
417 |
gtttg----gtataattacaatttgtttgt |
442 |
Q |
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| T |
47121156 |
gtttggtatgtataattacaatttgtttgt |
47121127 |
T |
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