View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20254_low_9 (Length: 429)

Name: NF20254_low_9
Description: NF20254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20254_low_9
NF20254_low_9
[»] chr4 (5 HSPs)
chr4 (14-413)||(4404859-4405271)
chr4 (96-157)||(10209176-10209239)
chr4 (93-143)||(30853480-30853532)
chr4 (96-125)||(33225946-33225975)
chr4 (96-157)||(35555729-35555789)
[»] chr8 (3 HSPs)
chr8 (93-126)||(24399901-24399934)
chr8 (96-143)||(4011223-4011272)
chr8 (96-157)||(16351518-16351580)
[»] chr6 (1 HSPs)
chr6 (67-157)||(10617313-10617405)
[»] chr7 (3 HSPs)
chr7 (67-127)||(14593871-14593931)
chr7 (96-125)||(44401238-44401267)
chr7 (67-127)||(16013394-16013454)
[»] chr5 (2 HSPs)
chr5 (68-157)||(33667547-33667638)
chr5 (70-165)||(17213188-17213285)
[»] chr3 (5 HSPs)
chr3 (67-160)||(11581555-11581650)
chr3 (96-167)||(27893229-27893302)
chr3 (99-142)||(44133938-44133983)
chr3 (97-125)||(21427695-21427723)
chr3 (89-125)||(36820090-36820126)
[»] chr1 (3 HSPs)
chr1 (67-126)||(10272369-10272428)
chr1 (15-157)||(50771635-50771779)
chr1 (67-124)||(51584855-51584912)
[»] chr2 (2 HSPs)
chr2 (15-124)||(26850294-26850403)
chr2 (93-125)||(18188889-18188921)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 413
Target Start/End: Complemental strand, 4405271 - 4404859
Alignment:
Q  14 cagagagaagacctatgaattatgtaataaggagaatatatcttagggagaatagtcaaatcactatatgtaggaaaatacttagaaaaattataagaga 113  Q
    ||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||||    
T  4405271 cagagagaagacctatgaatta-------aggagaatatatcgtagggagaatagtcaaatcactatatgtaggagagtacttaaaaaaattataagaga 4405179  T
Q  114 aactattaagaagac-taaagattaatgagtatgagaaagacatgattattga------------aacgccgttcgatttatatagtggactctacttaa 200  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||            |||||||||||||||||||||   |||||||||||    
T  4405178 aactattaagaagacctagaggttaatgagtatgagaaagacatgattattgataaaaacattataacgccgttcgatttatatagcaaactctacttaa 4405079  T
Q  201 tgaaataaaacttagttgttgt---atcattaaattatt----agatactctgcagttagcaacactccaaaacatgagagtgttcagtgttcaccatta 293  Q
    ||||||||||||| ||||||||   ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4405078 tgaaataaaacttggttgttgttgtatcattaaattatttattagatactctgcagttagcaacactccaaaacatgagagtgttcagtgttcaccatta 4404979  T
Q  294 atgcaacaacttacaaatatgatagaactgatgggtgcattaccttcgtggcttcttctccatcttttccttcggtactaggtaacttcgcttggccaca 393  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4404978 atgcaacaacttacaaatgtgatagaactgatgggggcattaccttcgtggcttcttctccatcttttccttcggtactaggtaacttcgcttggccaca 4404879  T
Q  394 tgggatttctcacatggaat 413  Q
    ||||||| ||||||||||||    
T  4404878 tgggattcctcacatggaat 4404859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 10209176 - 10209239
Alignment:
Q  96 tagaaaaattataagagaaactattaagaag--actaaagattaatgagtatgagaaagacatg 157  Q
    |||||||| ||||||||||||||||||||||   ||| ||||||||||||  ||||||||||||    
T  10209176 tagaaaaactataagagaaactattaagaaggatctagagattaatgagttggagaaagacatg 10209239  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 30853480 - 30853532
Alignment:
Q  93 acttagaaaaattataagagaaactattaagaaga--ctaaagattaatgagt 143  Q
    ||||||||||| ||||||||||||||||| ||| |  ||||||||||||||||    
T  30853480 acttagaaaaactataagagaaactattatgaaaaatctaaagattaatgagt 30853532  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 33225975 - 33225946
Alignment:
Q  96 tagaaaaattataagagaaactattaagaa 125  Q
    ||||||||||||||||||||||||||||||    
T  33225975 tagaaaaattataagagaaactattaagaa 33225946  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 35555789 - 35555729
Alignment:
Q  96 tagaaaaattataagagaaactattaagaagactaaagattaatgagtatgagaaagacatg 157  Q
    |||||||| ||||||||||||||||||| || ||| |||| |||||||  ||||||||||||    
T  35555789 tagaaaaactataagagaaactattaag-agtctagagataaatgagttggagaaagacatg 35555729  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 24399934 - 24399901
Alignment:
Q  93 acttagaaaaattataagagaaactattaagaag 126  Q
    ||||||||||||||||||||||||||||||||||    
T  24399934 acttagaaaaattataagagaaactattaagaag 24399901  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 4011223 - 4011272
Alignment:
Q  96 tagaaaaattataagagaaactattaag-aaga-ctaaagattaatgagt 143  Q
    |||||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  4011223 tagaaaaactataagagaaactattaagaaagatctaaagattaatgagt 4011272  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 16351518 - 16351580
Alignment:
Q  96 tagaaaaattataagagaaactattaagaag--actaaagattaatgagtatgagaaagacatg 157  Q
    |||||||| ||| ||||||||||||||||||   ||| |||||||||||| |||||||||||||    
T  16351518 tagaaaaactattagagaaactattaagaaggatctagagattaatgagt-tgagaaagacatg 16351580  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 10617405 - 10617313
Alignment:
Q  67 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaag--actaaagattaatgagtatgagaaagacatg 157  Q
    ||||||||||||| | |||| | || || |||||||| |||||||||||| |||||||||   ||| ||||||||||||  ||||||||||||    
T  10617405 agtcaaatcactagaggtagaagaaaacctagaaaaactataagagaaaccattaagaaggatctagagattaatgagttggagaaagacatg 10617313  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 14593871 - 14593931
Alignment:
Q  67 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaaga 127  Q
    ||||||||||||| | |||||  || || |||||||| |||||||||||||||||||||||    
T  14593871 agtcaaatcactagaggtaggggaagacctagaaaaactataagagaaactattaagaaga 14593931  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 125
Target Start/End: Complemental strand, 44401267 - 44401238
Alignment:
Q  96 tagaaaaattataagagaaactattaagaa 125  Q
    ||||||||||||||||||||||||||||||    
T  44401267 tagaaaaattataagagaaactattaagaa 44401238  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 16013394 - 16013454
Alignment:
Q  67 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaaga 127  Q
    ||||||||||| | | |||||  || || |||||||| |||||||||||||||||||||||    
T  16013394 agtcaaatcaccagaggtaggggaagacctagaaaaactataagagaaactattaagaaga 16013454  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 33667547 - 33667638
Alignment:
Q  68 gtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaag--actaaagattaatgagtatgagaaagacatg 157  Q
    |||||||||||| |||||||  || || |||||||| ||||||||||  ||||||||||   ||| ||||||||||||  ||||||||||||    
T  33667547 gtcaaatcactagatgtaggggaagacctagaaaaactataagagaagttattaagaaggatctagagattaatgagttggagaaagacatg 33667638  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 17213188 - 17213285
Alignment:
Q  70 caaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaag--actaaagattaatgagtatgagaaagacatgattattga 165  Q
    |||||||||| |||| ||| || ||||||||||| || |||| |||||||||| |||   ||| ||||||||||||  ||||||||||| ||| ||||    
T  17213188 caaatcactagatgtgggagaaaacttagaaaaactagaagaaaaactattaacaaggatctagagattaatgagttagagaaagacataatttttga 17213285  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 11581555 - 11581650
Alignment:
Q  67 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaag-aaga-ctaaagattaatgagtatgagaaagacatgatt 160  Q
    ||||||||||||| | ||| || || || |||||||| ||||||||||||||||||| |||| ||| |||| |||||||   ||||||||||||||    
T  11581555 agtcaaatcactagaggtatgagaagacctagaaaaactataagagaaactattaagaaagatctatagataaatgagttgaagaaagacatgatt 11581650  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 27893229 - 27893302
Alignment:
Q  96 tagaaaaattataagagaaactattaagaaga--ctaaagattaatgagtatgagaaagacatgattattgaaa 167  Q
    |||||| | |||||||||||||||||| |||   ||| ||||||||||||  ||||||||||||||| ||||||    
T  27893229 tagaaagactataagagaaactattaaaaaggacctagagattaatgagttggagaaagacatgatttttgaaa 27893302  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 44133983 - 44133938
Alignment:
Q  99 aaaaattataagagaaactattaaga-aga-ctaaagattaatgag 142  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||    
T  44133983 aaaaattataagagaaactattaagatagatctaaagattaatgag 44133938  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 125
Target Start/End: Complemental strand, 21427723 - 21427695
Alignment:
Q  97 agaaaaattataagagaaactattaagaa 125  Q
    |||||||||||||||||||||||||||||    
T  21427723 agaaaaattataagagaaactattaagaa 21427695  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 36820126 - 36820090
Alignment:
Q  89 aaatacttagaaaaattataagagaaactattaagaa 125  Q
    |||||| |||||||| |||||||||||||||||||||    
T  36820126 aaatacctagaaaaactataagagaaactattaagaa 36820090  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 10272369 - 10272428
Alignment:
Q  67 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaagaag 126  Q
    ||||||||||||| | |||||  || || ||||||| |||||||||||||||||||||||    
T  10272369 agtcaaatcactagaggtaggggaagacctagaaaacttataagagaaactattaagaag 10272428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 50771779 - 50771635
Alignment:
Q  15 agagagaagacctatgaattatgtaataaggagaatatatcttagggagaatagtcaaatcactatatgtaggaaaatacttagaaaaattataagagaa 114  Q
    |||||||||||| ||| ||| |||| |||||||| || |||  | ||||   |||||||| |||| | |||||  || || |||||||| |||||| |||    
T  50771779 agagagaagacccatggattttgtagtaaggagagtagatcagatggaggggagtcaaatgactagaggtaggggaagacctagaaaaactataagcgaa 50771680  T
Q  115 actattaagaag--actaaagattaatgagtatgagaaagacatg 157  Q
    ||||||||||||   ||| |||||||| |||  ||||||||||||    
T  50771679 actattaagaaggacctagagattaataagttggagaaagacatg 50771635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 51584855 - 51584912
Alignment:
Q  67 agtcaaatcactatatgtaggaaaatacttagaaaaattataagagaaactattaaga 124  Q
    ||||||||||||| | |||||  || || |||||||| ||||||||||||||||||||    
T  51584855 agtcaaatcactagaggtaggggaagacctagaaaaactataagagaaactattaaga 51584912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 26850294 - 26850403
Alignment:
Q  15 agagagaagacctatgaattatgtaataaggagaatatatcttagggagaatagtcaaatcactatatgtaggaaaatacttagaaaaattataagagaa 114  Q
    |||||||||||||||  |||||||| |||||||| || |||  | |||| ||||||||||||||| | | ||  ||| || |||||||  ||||||||||    
T  26850294 agagagaagacctatatattatgtagtaaggagactagatcagatggaggatagtcaaatcactaaaggcagagaaaaacctagaaaatctataagagaa 26850393  T
Q  115 actattaaga 124  Q
      ||||||||    
T  26850394 gttattaaga 26850403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 18188889 - 18188921
Alignment:
Q  93 acttagaaaaattataagagaaactattaagaa 125  Q
    |||||||||||||||||||||||||||| ||||    
T  18188889 acttagaaaaattataagagaaactattcagaa 18188921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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