View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20255_high_1 (Length: 510)

Name: NF20255_high_1
Description: NF20255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20255_high_1
NF20255_high_1
[»] chr7 (2 HSPs)
chr7 (11-495)||(32483158-32483628)
chr7 (18-109)||(32484573-32484668)
[»] chr5 (4 HSPs)
chr5 (339-392)||(17212268-17212321)
chr5 (339-396)||(37123569-37123626)
chr5 (318-396)||(24177501-24177580)
chr5 (144-392)||(26763-27011)
[»] chr3 (4 HSPs)
chr3 (146-197)||(9257907-9257958)
chr3 (343-462)||(27916580-27916700)
chr3 (301-410)||(38849062-38849174)
chr3 (366-402)||(48220806-48220842)
[»] chr2 (1 HSPs)
chr2 (339-397)||(37281104-37281163)
[»] chr1 (2 HSPs)
chr1 (144-190)||(32405884-32405930)
chr1 (342-382)||(38205779-38205819)
[»] chr8 (2 HSPs)
chr8 (144-197)||(15216694-15216747)
chr8 (339-395)||(41148487-41148544)
[»] chr4 (2 HSPs)
chr4 (366-399)||(32911985-32912018)
chr4 (277-396)||(48623753-48623873)


Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 495
Target Start/End: Original strand, 32483158 - 32483628
Alignment:
Q  11 caaaggaaaaatgaatgaattaacagaataatttattcaatcatttataaatacaacacatttgaagaatcgccttttcctaccataaaaccaaccatca 110  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32483158 caaaggaaaaatgaatgaattaacagaattatttattcaatcatttataaatacaacacatttgaagaatcgacttttcctaccataaaaccaaccatca 32483257  T
Q  111 tattatagcttctagtcagattcaagaatatggaagaagcattgaaaaggaagaataatggcaagacagttgaaccagacaacatacatgttgaagtgag 210  Q
    ||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||| ||||||||| || |||| |||||| |    
T  32483258 tattatagcttctagtcagattcaagaatatggaagaagcg-----------gaataatggcaagacagttgagccagacaacctatatgtagaagtgtg 32483346  T
Q  211 aataagtcttggagattaaaggtattttatgactcactagattttttaacaaaattatgtggttagagaaaatgttgtatgagtgatgatgaaatacttt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||    
T  32483347 aataagtcttggagattaaaggtattttatgactcactagattttttaacaaaattatgtggttagagaaaatgttgtatgagtggagacgaaatacttt 32483446  T
Q  311 aatcctgatctaaaagaacattgggaacatacaaaattgcgtaaattatagggggttaaacttatgaatcataccatgaagttatgagagagtgattgaa 410  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  32483447 aatcctgatctaaaagaatattgggaacatacaaaattgcgtaaattataggaggttaaacttatgaatcacaccatgaagttatgagagagtgattgaa 32483546  T
Q  411 tggtggagactaagaaaaagagtcaagttattgataacaaatttggttttataacaaggaggtttaccatagaaacgatctactt 495  Q
       |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  32483547 ---tggagactaagaaaaagagtcaagttattgataacaaatttgattttataacaaggaggtctaccatagaaacgatctactt 32483628  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 32484573 - 32484668
Alignment:
Q  18 aaaatgaatgaattaaca-gaataatttattcaatcatttataaatacaacacatttgaagaat--cgccttttcctaccat-aaaaccaaccatc 109  Q
    |||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||||||  | |||||||||||| | |||||||||||||    
T  32484573 aaaatgaatgaattaacatgaattatttattcaatcatttataaacacaacgcatttgaagaatcacaccttttcctaccgtaaaaaccaaccatc 32484668  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 17212268 - 17212321
Alignment:
Q  339 atacaaaattgcgtaaattatagggggttaaacttatgaatcataccatgaagt 392  Q
    ||||||||||| | |||||||| |||||||||||||||| | ||||||||||||    
T  17212268 atacaaaattgtgcaaattataaggggttaaacttatgagttataccatgaagt 17212321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 396
Target Start/End: Original strand, 37123569 - 37123626
Alignment:
Q  339 atacaaaattgcgtaaattatagggggttaaacttatgaatcataccatgaagttatg 396  Q
    |||||||| || | |||||| |||| ||||||||||||| ||||||||||||||||||    
T  37123569 atacaaaactgtgcaaattacagggagttaaacttatgattcataccatgaagttatg 37123626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 396
Target Start/End: Original strand, 24177501 - 24177580
Alignment:
Q  318 atctaaaagaacattgggaacatacaaaattgcgtaaattatagggg-gttaaacttatgaatcataccatgaagttatg 396  Q
    ||||| |||||||  ||| | |||||||||||||| |||||||||||  |||| || |||| ||||||||||||||||||    
T  24177501 atctataagaacaagggggatatacaaaattgcgtgaattataggggaattaagctaatgagtcataccatgaagttatg 24177580  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 392
Target Start/End: Original strand, 26763 - 27011
Alignment:
Q  144 aagaagcattgaaaaggaagaataatggcaagacagttgaaccagacaacatacatgttgaagtgagaataagtcttggagattaaaggtattttatgac 243  Q
    |||||||||||||||||  || |||||||||| | ||| | |||||||||||||    ||||||| | | |||||||||||| || ||| ||| | || |    
T  26763 aagaagcattgaaaagggtgagtaatggcaaggcggttaagccagacaacatactgactgaagtgtggaaaagtcttggaga-tagaggaattgtgtggc 26861  T
Q  244 tcactagattttttaacaaaattatgtggttagagaaaatgttgtatgagtgatgatgaaatactttaatcctgatctaaaagaacattgggaacataca 343  Q
    |||| | | |||||||| | |||||| ||  | ||||||||| | |||||||   | |||| |||||||| ||| |||| |||||||  | | | |||||    
T  26862 tcaccaaactttttaacgagattatgaggacaaagaaaatgtcggatgagtggaaaagaaacactttaattctgttctataagaacaaggaggatataca 26961  T
Q  344 aaattgcgtaaattatagggg-gttaaacttatgaatcataccatgaagt 392  Q
    ||||||    |||||||||||  ||||| | |||| ||||||||||||||    
T  26962 aaattgttcgaattataggggaattaaattaatgagtcataccatgaagt 27011  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 9257907 - 9257958
Alignment:
Q  146 gaagcattgaaaaggaagaataatggcaagacagttgaaccagacaacatac 197  Q
    |||||||||||||||| || |||||||||| ||||||  |||||||||||||    
T  9257907 gaagcattgaaaaggatgagtaatggcaaggcagttgggccagacaacatac 9257958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 462
Target Start/End: Original strand, 27916580 - 27916700
Alignment:
Q  343 aaaattgcgtaaattatagggggt-taaacttatgaatcataccatgaagttatgag--agagtgattgaatggtggagactaagaaaa-agagtcaagt 438  Q
    |||||||||| ||||||||||| | |||| | |||| ||||||||||||||||||||  || |||||||||    | ||| |||||||| |||  |||||    
T  27916580 aaaattgcgtgaattataggggatataaattgatgagtcataccatgaagttatgagaaagggtgattgaa---cgaagaataagaaaagagacccaagt 27916676  T
Q  439 tattgataacaaatttggttttat 462  Q
    || ||||||| |||||||||||||    
T  27916677 tagtgataaccaatttggttttat 27916700  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 38849062 - 38849174
Alignment:
Q  301 gaaatactttaatcctgatctaaaagaacattgggaacatacaaaattgcgtaaattataggggg-ttaaacttatgaatcataccatgaagttat--ga 397  Q
    |||| |||||||| |  ||||| |||||||  ||| | |||||||||||||  ||||||| |||  ||||||| |||| |||||||||||||||||  ||    
T  38849062 gaaacactttaattccaatctataagaacaagggggatatacaaaattgcgcgaattataagggaattaaactaatgagtcataccatgaagttatggga 38849161  T
Q  398 gagagtgattgaa 410  Q
     ||||||||||||    
T  38849162 aagagtgattgaa 38849174  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 402
Target Start/End: Original strand, 48220806 - 48220842
Alignment:
Q  366 ttaaacttatgaatcataccatgaagttatgagagag 402  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  48220806 ttaaacttatgaatcatatcatgaagttatgatagag 48220842  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 37281104 - 37281163
Alignment:
Q  339 atacaaaattgcgtaaattataggggg-ttaaacttatgaatcataccatgaagttatga 397  Q
    |||||||||||||  ||||||||| |  ||||||| ||||||||||||||||||||||||    
T  37281104 atacaaaattgcgcgaattataggagaattaaactaatgaatcataccatgaagttatga 37281163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 32405930 - 32405884
Alignment:
Q  144 aagaagcattgaaaaggaagaataatggcaagacagttgaaccagac 190  Q
    |||||||||||||||||| || |||||||||| |||||| |||||||    
T  32405930 aagaagcattgaaaaggatgagtaatggcaaggcagttggaccagac 32405884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 382
Target Start/End: Complemental strand, 38205819 - 38205779
Alignment:
Q  342 caaaattgcgtaaattatagggggttaaacttatgaatcat 382  Q
    ||||| || ||||||||||||||||||||||||||| ||||    
T  38205819 caaaagtgtgtaaattatagggggttaaacttatgagtcat 38205779  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 15216747 - 15216694
Alignment:
Q  144 aagaagcattgaaaaggaagaataatggcaagacagttgaaccagacaacatac 197  Q
    |||||||||||||||||| || |||||||||| ||||||  || ||||||||||    
T  15216747 aagaagcattgaaaaggatgagtaatggcaaggcagttgggccggacaacatac 15216694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 41148487 - 41148544
Alignment:
Q  339 atacaaaattgcgtaaattataggggg-ttaaacttatgaatcataccatgaagttat 395  Q
    ||||||||||||||| || |||||||| |||||||||||| ||||||||  |||||||    
T  41148487 atacaaaattgcgtatatgatagggggattaaacttatgagtcataccacaaagttat 41148544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 399
Target Start/End: Complemental strand, 32912018 - 32911985
Alignment:
Q  366 ttaaacttatgaatcataccatgaagttatgaga 399  Q
    |||||||||||| |||||||||||||||||||||    
T  32912018 ttaaacttatgagtcataccatgaagttatgaga 32911985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 396
Target Start/End: Complemental strand, 48623873 - 48623753
Alignment:
Q  277 agaaaatgttgtatgagtgatgatgaaatactttaatcctgatctaaaagaacattgggaacatacaaaattgcgtaaattataggggg-ttaaacttat 375  Q
    ||||||||| |||||||||  ||  ||  |||||||| |  ||||| |||||||  ||| | |||||||||||||  |||||||||||  |||| || ||    
T  48623873 agaaaatgtcgtatgagtggagaataagcactttaattccaatctataagaacaagggggatatacaaaattgcgcgaattataggggaattaagctaat 48623774  T
Q  376 gaatcataccatgaagttatg 396  Q
    || ||||||||||||||||||    
T  48623773 gagtcataccatgaagttatg 48623753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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