View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20255_high_2 (Length: 487)
Name: NF20255_high_2
Description: NF20255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20255_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Original strand, 10132812 - 10133271
Alignment:
| Q |
12 |
ggagcagagactccactaaagatggtcagtcatagttccgagcataataactactaaaggtggcaaaaacagacagtaatactttaccccaataaagtaa |
111 |
Q |
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| T |
10132812 |
ggagcagagattccactaaagatggtcagtcatagttctgagcatagtaactactaaaggtggcaaaaacagactgtaatactttaccccaataaagtaa |
10132911 |
T |
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| Q |
112 |
taacatgtttaaccnnnnnnntctcatgtgaaattcctaacctattcttaaagtattgaaaaatatgcaagttccagagtcatgcatataaacacatgaa |
211 |
Q |
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| T |
10132912 |
taacatgtttaaccaaaaaaatctcatgtgaaattcctaacctattcttaaagtattgaaaaatatgcaagttccagagtcatgcatataaacacatgaa |
10133011 |
T |
|
| Q |
212 |
agcataaatttcaaaatttaaatcatatatatactatagcatcaagacagaaagcaatagaagaaagaaaaaacaggaacatatgtatgatgataaagta |
311 |
Q |
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| T |
10133012 |
agcataaatttcaaattttaaatcatatatataccatagcatcaagacagaaagcaatagaagaaagaaaaaacaggaacatatgtatgatgataaagta |
10133111 |
T |
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| Q |
312 |
tataccatgagagtgataaacgagtaagagcaaaagaaatggaatctctccaaccatgacaaacatgagaagccgtaatcaccatttgatcatccaaaag |
411 |
Q |
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| T |
10133112 |
tataccatgagagtgataaacgagtgagagcaaaagaaatggaatctctccaaccatgacaaacatgagaagctgtaatcaccatttgatcatccaaaag |
10133211 |
T |
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| Q |
412 |
tgacaaaatttgcatcaaaagttcaactggaatatccttccactctctcactgtcatcat |
471 |
Q |
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| T |
10133212 |
tgacaaaatttgcatcaaaagttcaactggaatatccttccactctctcactgtcatcat |
10133271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 310 - 453
Target Start/End: Complemental strand, 40693557 - 40693414
Alignment:
| Q |
310 |
tatataccatgagagtgataaacgagtaagagcaaaagaaatggaatctctccaaccatgacaaacatgagaagccgtaatcaccatttgatcatccaaa |
409 |
Q |
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||||||||| |||||||||||||||| ||| |||| |||| ||||||||||||||| |||||||| |||| | |||||| | |||||||||| | |
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| T |
40693557 |
tatataccaagagagtgataaacgagcaaggccaaagtaaatagaatctctccaaccacgacaaacaccagaaactcgaatcacagtctgatcatccaca |
40693458 |
T |
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| Q |
410 |
agtgacaaaatttgcatcaaaagttcaactggaatatccttcca |
453 |
Q |
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| T |
40693457 |
agagacagaatctgcatcaaaagctcaacaggaatatccttcca |
40693414 |
T |
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