View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20255_high_3 (Length: 481)
Name: NF20255_high_3
Description: NF20255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20255_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 16071187 - 16071081
Alignment:
| Q |
77 |
catgatgatgagaacaattcaaacacaattgtaggatatgaataatttgctctcatttcccaattttctcttttgaattcttttttatagatattttaca |
176 |
Q |
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| T |
16071187 |
catgatgatgagaacaattcaaacacaattgtag-atatgaataattttctctcatttcccaattttttcttttgaattctattttatagatattttaca |
16071089 |
T |
|
| Q |
177 |
gaagatta |
184 |
Q |
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|||||||| |
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| T |
16071088 |
gaagatta |
16071081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 350 - 463
Target Start/End: Complemental strand, 16070926 - 16070813
Alignment:
| Q |
350 |
agcaatgagaaaatttcagatctaactttaaaatatcaactcaaagaaacaatttgaaccgtatgacttgacaaaattatgattcaagaaaaactcggag |
449 |
Q |
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|||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||| |||||||| |||||||||| || ||||||| |||| |
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| T |
16070926 |
agcaatgagacaatttcagatctaacttaaaaatataaactcaaagaatcaatttgaaccatataacttgacagaattatgattaaaaaaaaactaggag |
16070827 |
T |
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| Q |
450 |
aataaggagtaaaa |
463 |
Q |
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|||||||||||||| |
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| T |
16070826 |
aataaggagtaaaa |
16070813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 208
Target Start/End: Complemental strand, 16067910 - 16067779
Alignment:
| Q |
77 |
catgatgatgagaacaattcaaacacaattgtaggatatgaataatttgctctcatttcccaattttctcttttgaattctttttta-tagatattttac |
175 |
Q |
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||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||||| | |||||||||||| |
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| T |
16067910 |
catgatgatgaaaacgattcaaacacaattgtag-atatgaatcatttgctctcatttcccaattttttattttgaaaaaaaaaaaagtagatattttac |
16067812 |
T |
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| Q |
176 |
agaagattagaaaacccaaaattttagggcttg |
208 |
Q |
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| T |
16067811 |
taaagattagaaaacccaaaattttagggcttg |
16067779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 3883780 - 3883721
Alignment:
| Q |
81 |
atgatgagaacaattcaaacacaattgtaggatatgaataatttgctctcatttcccaatt |
141 |
Q |
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||||||||||| ||||||||| ||||||| |||||||| ||||| ||||||||||||||| |
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| T |
3883780 |
atgatgagaacgattcaaacataattgtat-atatgaatcatttgatctcatttcccaatt |
3883721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 3897648 - 3897590
Alignment:
| Q |
81 |
atgatgagaacaattcaaacacaattgtaggatatgaataatttgctctcatttcccaat |
140 |
Q |
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||||||||||| ||||||||| ||||||| |||||||| |||||||||||||| ||||| |
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| T |
3897648 |
atgatgagaacgattcaaacataattgtat-atatgaatcatttgctctcatttaccaat |
3897590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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