View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20255_high_4 (Length: 349)
Name: NF20255_high_4
Description: NF20255
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20255_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 17773078 - 17772763
Alignment:
| Q |
18 |
cttagcaatttatcccaagcgtcattaactatacattgttaataatcttctatgcatttacacttaatgatgaagatgtccactgtgactcatcttctct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
17773078 |
cttagcaatttatcccaagcgtcattaactattcattgct--taatcttctatgcatttacacttaatgatgaagatatccactgtgattcatcttctct |
17772981 |
T |
|
| Q |
118 |
aagaaacattaaatgatacctctaatttggtttgtcctacatctttgtatattgttgtaaaatgtttgctcctaaacttttttgttggccatgaaggaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17772980 |
aagaaacattaaatgatacctctaatttggtttgtcctacatctttgtatattgttgtaaaatgtttgctcctaaacttttttgttggccatgaaggaga |
17772881 |
T |
|
| Q |
218 |
gtttcactagactggatcatcacattagattcaatctcaactctttcatccaatattatattttatctcacacttgacgtatcatattatctctctctca |
317 |
Q |
| |
|
||||||||||| | |||||||||||||||| ||||||||| ||| |||||||||| |||| ||||| ||||| |||||| |||||||||||||| ||||| |
|
|
| T |
17772880 |
gtttcactagattagatcatcacattagatacaatctcaattctctcatccaatactatactttatgtcacatttgacgcatcatattatctctttctca |
17772781 |
T |
|
| Q |
318 |
agtgtgactctttgcgtc |
335 |
Q |
| |
|
|||| |||| |||||||| |
|
|
| T |
17772780 |
agtgagactttttgcgtc |
17772763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University