View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20256_low_1 (Length: 336)
Name: NF20256_low_1
Description: NF20256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20256_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 8182395 - 8182090
Alignment:
| Q |
13 |
gagatcgatagaggagcacacttcaaagtcttaagcctacactaacatatcaacccacgtgcgtcaccacttcatgtatgtttacccaacacttaaagat |
112 |
Q |
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| T |
8182395 |
gagatcgatagaggagcacacttcaaagtcttaagcctacactaacatatcaacccacgtgcgtcaccacttcatgtatgtttacccaacacttaaagat |
8182296 |
T |
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| Q |
113 |
tattgagtaattcaggaccctcatgacaccaaatcaaacactactttgatgctcaattccagtgaagtacatgcacaagattacaagctagtacaaatgg |
212 |
Q |
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| T |
8182295 |
tattgagtaattcaggaccctcatgacaccaaatcaaacactactctgatgctcaattccagtgaagtacatgcacaagattacaagctagtacaaatgg |
8182196 |
T |
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| Q |
213 |
tttgtgtcatgggggccagctagttatatgatcaaggacattatgcatagttgccagcatggaggacacaacctttcactaagaaatgatcctgaaactg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8182195 |
tttgtgtcatgggggccagctagttatatgatcaaggacattatgcatagttgccagcatggaggacacaacctttcactaagaaatgatcctgaaactg |
8182096 |
T |
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| Q |
313 |
ctgaca |
318 |
Q |
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|||||| |
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| T |
8182095 |
ctgaca |
8182090 |
T |
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