View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20256_low_3 (Length: 222)
Name: NF20256_low_3
Description: NF20256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20256_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 38741611 - 38741524
Alignment:
| Q |
112 |
tcagtctacaacacctccaagaatgaggtgcctacaactaatcctaacctaaaagttaaaaaagttaattttaactcaaatccattta |
199 |
Q |
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| T |
38741611 |
tcagtcttcaacacctccaagaatgaggtgcctacaactaatcctaacctaaaagttaaaaaagttaattttaactcaaatccattta |
38741524 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 38741708 - 38741646
Alignment:
| Q |
15 |
tggagttacaaagtcatatgaatatggaggaattatttcatcaagattctaaggtggagcaac |
77 |
Q |
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| T |
38741708 |
tggagttacaaagtcatatgaatatggaggaattatttcatcaagattctaaggtggagcaac |
38741646 |
T |
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