View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20256_low_4 (Length: 206)
Name: NF20256_low_4
Description: NF20256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20256_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 8673967 - 8673800
Alignment:
| Q |
17 |
aaattcgattggagagaaaagttcatctcactaaatgtggtagatactttgtatttataacatattcatttattaaaaagacactatattcataaagaaa |
116 |
Q |
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| T |
8673967 |
aaattcgattggagagaaaagttcatctcactaaatgtggtagatactttgtatttataacatatacatttattaaaaagacactagattcataaagaaa |
8673868 |
T |
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| Q |
117 |
attgtttaacttgatgcgataccgacaacggcgaagttagcaatatttttatgagatgactacatataaaga |
188 |
Q |
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| T |
8673867 |
attgtttaacttgatgcgataccgacaacggcgaagtt----atatttttatgaggtgactacatataaaga |
8673800 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 30226030 - 30226070
Alignment:
| Q |
145 |
cggcgaagttagcaatatttttatgagatgactacatataa |
185 |
Q |
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| T |
30226030 |
cggcgaagctagcaatatttttatgaggtggctacatataa |
30226070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 52725314 - 52725274
Alignment:
| Q |
145 |
cggcgaagttagcaatatttttatgagatgactacatataa |
185 |
Q |
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| T |
52725314 |
cggcgaagctagcaatatttttatgaggtggctacatataa |
52725274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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