View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_high_13 (Length: 294)
Name: NF20257_high_13
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 52 - 277
Target Start/End: Complemental strand, 19603692 - 19603467
Alignment:
| Q |
52 |
tatagataccatatgttcgaggtaggatggatgcaacggacgaatgaaaaacgggttatcggaatgaaaattcatggctctccttttagtattttgtagt |
151 |
Q |
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| T |
19603692 |
tatagataccatatgttcaaggtaggatggatgcaacggacgaatgaaaaaggggttatcggaatgaaaattcatggctctccttttagtattttgtagt |
19603593 |
T |
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| Q |
152 |
aattctttccaattcatagcttcatttgatgagacattcttttctttgaagaaaatttctgcattacctcctgaaatagttaataaaatagtttcaacat |
251 |
Q |
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| T |
19603592 |
aattctttccaattcatagcttcatttgatgagacattcttttctttgaagaaaatttcagcattacctcctgaaatagttaataaaatagtttcaacat |
19603493 |
T |
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| Q |
252 |
tcaagtatcaatttaacattatgatg |
277 |
Q |
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| T |
19603492 |
tcaagtatcaatttaacattatgatg |
19603467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 19603744 - 19603714
Alignment:
| Q |
4 |
taaactatatagtaaaatgtggaaattgatt |
34 |
Q |
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| T |
19603744 |
taaactatatagtaaaatgtggaaattgatt |
19603714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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