View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_high_16 (Length: 252)
Name: NF20257_high_16
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8270214 - 8269979
Alignment:
| Q |
1 |
ctacccgttttaactaccttcatagtctcttagacccacttcaacaaaaattaaattaattaaggacacccaccacataacatggatcattgtttttcaa |
100 |
Q |
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| T |
8270214 |
ctacccgttttaactaccttcatagtctcttagacccacttcaacaaaaaataaattaattaaggacacccaccacataacatggatcattgtttttcaa |
8270115 |
T |
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| Q |
101 |
ccacttcaacttcaacttcaacacaacaaaatcgttgtgttgaacatgcttcaagcttgaagaagaggttccttaacaaggcaaaggaacagaggtctag |
200 |
Q |
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| T |
8270114 |
ccacttcaacttcaac------acaacaaaatcgttgtgttgaacatgcttcaagcttgaagaagaggttccttaacaaggcaaaggaacagaggtctag |
8270021 |
T |
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| Q |
201 |
gctctatatattaaagaggtgcattattatattactatgttg |
242 |
Q |
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| T |
8270020 |
gctctatatattaaagaggtgcattattatattactatgttg |
8269979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 55245696 - 55245604
Alignment:
| Q |
150 |
ttcaagcttgaagaagaggttccttaacaaggcaaaggaacagaggtctaggctctatatattaaagaggtgcattattatattactatgttg |
242 |
Q |
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| T |
55245696 |
ttcaagcttgaagaagaggttcctcaagagagctaaagaagagaggtccaggctctacatactaaagaggtgcattattatgttactatgttg |
55245604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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