View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_high_17 (Length: 245)
Name: NF20257_high_17
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 26084903 - 26084668
Alignment:
| Q |
1 |
gcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaattta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
26084903 |
gcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaaattttgtgaatcta |
26084804 |
T |
|
| Q |
101 |
ataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084803 |
ataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattct |
26084704 |
T |
|
| Q |
201 |
aagagaatttttgcagttgggatatagtgttcttct |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26084703 |
aagagaatttttgcagttgggatatagtgttcttct |
26084668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 26120459 - 26120230
Alignment:
| Q |
7 |
ctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaag |
106 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| ||| |
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| T |
26120459 |
ctcgagatctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaatcaag |
26120360 |
T |
|
| Q |
107 |
tcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagaga |
206 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| | || ||||| |||||||||||||| |
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| T |
26120359 |
tcccattttacaaaagagacccggataatggtattgatactgttggaaaaattccaaacggcgaggctgtctccagtctcaaattccgtattctaagaga |
26120260 |
T |
|
| Q |
207 |
atttttgcagttgggatatagtgttcttct |
236 |
Q |
| |
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|||||||||||||||||| ||||||||||| |
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| T |
26120259 |
atttttgcagttgggatacagtgttcttct |
26120230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 26097172 - 26096943
Alignment:
| Q |
7 |
ctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |
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| T |
26097172 |
ctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaatcgaataaag |
26097073 |
T |
|
| Q |
107 |
tcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagaga |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||| | |||||||||| ||| ||||||| |||||||||||| |
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| T |
26097072 |
tcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggtcaacggcgcggctgtctccacgctcaaatttcatattctaagaga |
26096973 |
T |
|
| Q |
207 |
atttttgcagttgggatatagtgttcttct |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
26096972 |
atttttgcagttgggatatagtgttcttct |
26096943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 26065166 - 26064943
Alignment:
| Q |
13 |
gtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaagtcccat |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||||| |
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| T |
26065166 |
gtctggttcactaatatcaagagagttggtatatctaattatctagttgttgccttagacgatgagattgcaaagttttgtgaattgaatcaagtcccat |
26065067 |
T |
|
| Q |
113 |
tttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagagaattttt |
212 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26065066 |
tttacaaaagagacccggataatggtattgatgctgttggaaaaagaggaaagagaacggctgtctccgggcttaaatttcgtattctaagggaattttt |
26064967 |
T |
|
| Q |
213 |
gcagttgggatatagtgttcttct |
236 |
Q |
| |
|
|||| |||||||||| |||||||| |
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|
| T |
26064966 |
gcagctgggatatagcgttcttct |
26064943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 26127116 - 26126887
Alignment:
| Q |
7 |
ctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| ||| |||| |||||||||| ||||||| |
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| T |
26127116 |
ctcgaggtctggttcaccaatatcaagagagtcggtatacctaattatttagttgttgccttagacgatgaaatttcaaagttttgtgaatcaaataaag |
26127017 |
T |
|
| Q |
107 |
tcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgggcttaaatttcgtattctaagaga |
206 |
Q |
| |
|
|||| |||||| |||||||||||||| ||| ||||||||||||||||||||| | | | ||||||||| |||||||||||||||||| ||||||| |
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| T |
26127016 |
tcccgttttacaaaagagacccggatgatgctattgatactgttggaaaaataggagggagagcggctgtctctgggcttaaatttcgtattttaagaga |
26126917 |
T |
|
| Q |
207 |
atttttgcagttgggatatagtgttcttct |
236 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
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| T |
26126916 |
atttttgcagttgggatatagcgttcttct |
26126887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 26036521 - 26036298
Alignment:
| Q |
10 |
gaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacaatgagattgcaaaattttgtgaatttaataaagtcc |
109 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||| ||| |||||| |
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| T |
26036521 |
gaggtctggttctcaaatatcaagagagttggtatatctaattatctagttgttgctttagacgatgagatttcaaaattttgtgaaacaaatcaagtcc |
26036422 |
T |
|
| Q |
110 |
cattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggg------gctgtctccgggcttaaatttcgtattctaag |
203 |
Q |
| |
|
|||||||| |||||||||| ||| ||| |||||| || |||||||| ||| || ||| |||||||||||||||||||||||||||||||| |
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|
| T |
26036421 |
cattttacaaaagagacccagatgatggtattgacaccattggaaaa----caa--ggagggaaccatgctgtctccgggcttaaatttcgtattctaag |
26036328 |
T |
|
| Q |
204 |
agaatttttgcagttgggatatagtgttct |
233 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
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|
| T |
26036327 |
agaatttttgcagttgggatatggtgttct |
26036298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 6773841 - 6773781
Alignment:
| Q |
11 |
aggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttaga |
71 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||| |||||||| | |||||||| ||||| |
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|
| T |
6773841 |
aggtatggttcaccaatatcaagaaggttggcatatctaattatttggttgttgcattaga |
6773781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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