View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20257_high_22 (Length: 236)
Name: NF20257_high_22
Description: NF20257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20257_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44790537 - 44790757
Alignment:
| Q |
1 |
tactcttagatgaggtttgagctctgaccaatgttgtttactcaacaactccgatattgtcggtatgcttaatgactgcaagattggacctgtaaacaga |
100 |
Q |
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| T |
44790537 |
tactcttagatgaggtttgagctctgaccaatgttgtttactcaacaactccgaaattgtcggtatgcttaatgactgcaagattggacctgtaaacaga |
44790636 |
T |
|
| Q |
101 |
aatttcactggttattaacaagtaaaaatcttccatttcttttgattgatggtaaagaaagtaaaatgagttgaacggaataagaagattaaaagatatg |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44790637 |
aatt-cactggttattaacaagtaaaaatcttccatttcttttgattgatggtaaagaaagtaaaatgagttgaacggaataagaagattaaaagatatg |
44790735 |
T |
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| Q |
201 |
tgtaataaacaataatagaatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
44790736 |
tgtaataaacaataatagaatt |
44790757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28339339 - 28339559
Alignment:
| Q |
1 |
tactcttagatgaggtttgagctctgaccaatgttgtttactcaacaactccgatattgtcggtatgcttaatgactgcaagattggacctgtaaacaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28339339 |
tactcttagatgaggtttgagctctgaccaatgttgtttactcaacaactccgaaattgttggtatgcttaatgactgcaagattggacctgtaaacaga |
28339438 |
T |
|
| Q |
101 |
aatttcactggttattaacaagtaaaaatcttccatttcttttgattgatggtaaagaaagtaaaatgagttgaacggaataagaagattaaaagatatg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28339439 |
aatt-cactggttattaacaagtaaaaatcttccatttcttttgattgatggtaaagaaagtaaaatgagttgaacgaaataagaagattaaaagatatg |
28339537 |
T |
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| Q |
201 |
tgtaataaacaataatagaatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
28339538 |
tgtaataaacaataatagaatt |
28339559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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